SMTL ID : 6ony.1

BRD2_Bromodomain1 complex with inhibitor 744

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: D.92, D.93, I.94 Ligands: HWV.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.93, A:I.94 EDO.4: 4 residues within 4Å: Chain B: D.92, D.93, I.94 Ligands: HWV.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.94 Water bridges: B:D.92, B:D.93

2 x HWV: N-ethyl-4-[2-(4-fluoro-2,6-dimethylphenoxy)-5-(2-hydroxypropan-2-yl)phenyl]-6-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-2-carboxamide(Non-covalent)

HWV.2: 16 residues within 4Å: Chain A: W.29, P.30, F.31, Q.33, P.34, V.35, D.36, L.40, L.42, C.84, Y.87, N.88, K.89, D.92, I.94 Ligands: EDO.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.29, A:W.29, A:P.30, A:D.36, A:L.40, A:L.40, A:L.40, A:Y.87, A:I.94 Hydrogen bonds: A:D.36, A:N.88, A:N.88, A:N.88 Water bridges: A:Q.33, A:P.34 HWV.3: 12 residues within 4Å: Chain B: W.29, P.30, F.31, Q.33, V.35, L.40, L.42, Y.87, N.88, D.92, I.94 Ligands: EDO.4 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.29, B:W.29, B:W.29, B:P.30, B:L.40, B:L.40, B:L.40, B:Y.87, B:I.94 Hydrogen bonds: B:P.30, B:Q.33, B:N.88, B:N.88, B:N.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faivre, E.J. et al., Selective inhibition of the BD2 bromodomain of BET proteins in prostate cancer. Nature (2020)

Release Date

2020-01-29

Peptides

Bromodomain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bromodomain-containing protein 2

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