SMTL ID : 6oo0.1

Crystal structure of bovine Fab NC-Cow1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 11 residues within 4Å: Chain A: A.154, V.159, A.161, G.162, L.182, S.183, L.184, Q.188, H.192, Y.195 Ligands: MPD.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.154, A:Q.188, A:Y.195 MPD.2: 3 residues within 4Å: Chain A: A.161, Q.188 Ligands: MPD.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.161 MPD.3: 12 residues within 4Å: Chain B: V.24, S.33, V.34, V.51, D.52, T.53, K.71, D.72, N.73, S.76, R.77, I.78 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.34, B:K.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stanfield, R.L. et al., Structural basis of broad HIV neutralization by a vaccine-induced cow antibody. Sci Adv (2020)

Release Date

2020-04-01

Peptides

NC-Cow1 light chain: A
NC-Cow1 heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

NC-Cow1 light chain

NC-Cow1 heavy chain

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