SMTL ID : 6ool.1

Structural elucidation of the Ectodomain of mouse UNC5H2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 5 residues within 4Å: Chain A: N.166, E.167, A.197, N.198, T.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.167

2 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 4 residues within 4Å: Chain A: S.226, S.227, W.228, R.245 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.226, A:W.228, A:R.245, A:R.245 MAN.3: 4 residues within 4Å: Chain A: G.224, W.225, R.247, E.262 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.225, A:R.247, A:R.247

13 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: P.30, Q.31, E.42, L.43, H.44 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: R.90 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: R.210 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: K.129, R.210, R.211 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: D.175, T.176, N.177, R.192 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: V.221, N.222 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: Y.25, F.26 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain A: P.135, L.136, K.138, L.147, Q.149 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: L.142, L.193 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: A.208, K.209 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain A: R.80, R.82, E.83 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain A: K.56, G.59 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain A: V.62, S.63 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stetefeld, J. et al., Structural elucidation of the Ectodomain of mouse UNC5H2. To be published

Release Date

2020-04-29

Peptides

Netrin receptor UNC5B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Netrin receptor UNC5B