SMTL ID : 6oot.1

HIV-1 Protease NL4-3 L89V, L90M Mutant in complex with darunavir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.7, R.8 Chain B: R.87 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.8, A:R.8 Salt bridges: B:R.87 SO4.3: 5 residues within 4Å: Chain A: L.5, W.6 Chain B: R.87, N.88, T.91 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.91, A:W.6 Water bridges: B:D.29, B:N.88 Salt bridges: B:R.87

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.2: 29 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 18 PLIP interactions: 9 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:A.28, B:V.32, B:P.81, B:V.82, B:I.84, A:I.84 Hydrogen bonds: B:D.30, B:D.30, B:I.50, A:D.25, A:G.27, A:D.29, A:D.30 Salt bridges: B:D.25, A:D.25 Water bridges: A:D.30, A:I.50, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Henes, M. et al., Molecular Determinants of Epistasis in HIV-1 Protease: Elucidating the Interdependence of L89V and L90M Mutations in Resistance. Biochemistry (2019)

Release Date

2019-08-21

Peptides

NL4-3 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NL4-3 PROTEASE