SMTL ID : 6oov.1

Crystal structure of HMCES SRAP domain in complex with palindromic 3' overhang DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

47 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 3 residues within 4Å: Chain A: D.21, Q.25, R.27 Ligand excluded by PLIP UNX.2: 2 residues within 4Å: Chain A: R.27, L.28 Ligand excluded by PLIP UNX.3: 2 residues within 4Å: Chain A: L.191, Y.192 Ligand excluded by PLIP UNX.4: 4 residues within 4Å: Chain A: D.33, A.70, P.71 Ligands: UNX.5 Ligand excluded by PLIP UNX.5: 3 residues within 4Å: Chain A: R.32, D.33 Ligands: UNX.4 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: E.30, R.55 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: R.32, E.59 Ligand excluded by PLIP UNX.8: 5 residues within 4Å: Chain A: A.16, W.170, R.171, L.172 Ligands: UNX.9 Ligand excluded by PLIP UNX.9: 3 residues within 4Å: Chain A: L.172, T.174 Ligands: UNX.8 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: R.22, R.23, D.63 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain A: K.224, E.235 Ligand excluded by PLIP UNX.12: 2 residues within 4Å: Chain A: L.237, I.240 Ligand excluded by PLIP UNX.13: 3 residues within 4Å: Chain A: M.102, T.233, Q.234 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain A: K.238, L.239 Ligand excluded by PLIP UNX.15: 5 residues within 4Å: Chain A: I.215, L.216, D.217, A.221, L.239 Ligand excluded by PLIP UNX.16: 2 residues within 4Å: Chain A: Q.234, L.237 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: D.33, P.34, D.35 Ligand excluded by PLIP UNX.18: 1 residues within 4Å: Chain A: D.189 Ligand excluded by PLIP UNX.19: 1 residues within 4Å: Chain A: F.228 Ligand excluded by PLIP UNX.20: 4 residues within 4Å: Chain A: E.230, V.231, S.232, E.235 Ligand excluded by PLIP UNX.21: 3 residues within 4Å: Chain A: P.9, R.10, P.39 Ligand excluded by PLIP UNX.22: 1 residues within 4Å: Chain A: Y.139 Ligand excluded by PLIP UNX.23: 5 residues within 4Å: Chain A: R.10, W.31 Ligands: UNX.24, UNX.25, UNX.26 Ligand excluded by PLIP UNX.24: 4 residues within 4Å: Chain A: R.10, D.11, T.14 Ligands: UNX.23 Ligand excluded by PLIP UNX.25: 4 residues within 4Å: Chain A: E.30, W.31 Ligands: UNX.23, UNX.26 Ligand excluded by PLIP UNX.26: 4 residues within 4Å: Chain A: T.14, P.29 Ligands: UNX.23, UNX.25 Ligand excluded by PLIP UNX.27: 1 residues within 4Å: Chain A: R.27 Ligand excluded by PLIP UNX.28: 3 residues within 4Å: Chain D: E.30, R.32, E.59 Ligand excluded by PLIP UNX.29: 5 residues within 4Å: Chain D: N.48, R.73, L.191, Y.192 Ligands: UNX.30 Ligand excluded by PLIP UNX.30: 3 residues within 4Å: Chain D: L.191, Y.192 Ligands: UNX.29 Ligand excluded by PLIP UNX.31: 2 residues within 4Å: Chain D: H.57, Y.192 Ligand excluded by PLIP UNX.32: 1 residues within 4Å: Chain D: V.190 Ligand excluded by PLIP UNX.33: 2 residues within 4Å: Chain D: R.32, D.33 Ligand excluded by PLIP UNX.34: 2 residues within 4Å: Chain D: W.31, P.34 Ligand excluded by PLIP UNX.35: 3 residues within 4Å: Chain D: S.232, T.233, Q.234 Ligand excluded by PLIP UNX.36: 1 residues within 4Å: Chain D: F.228 Ligand excluded by PLIP UNX.37: 4 residues within 4Å: Chain D: S.98, V.199, D.200, P.242 Ligand excluded by PLIP UNX.38: 2 residues within 4Å: Chain D: H.57, F.58 Ligand excluded by PLIP UNX.39: 4 residues within 4Å: Chain D: E.30, W.31 Ligands: UNX.40, UNX.42 Ligand excluded by PLIP UNX.40: 4 residues within 4Å: Chain D: T.14, P.29 Ligands: UNX.39, UNX.42 Ligand excluded by PLIP UNX.41: 5 residues within 4Å: Chain D: R.10, D.11, T.14, W.31 Ligands: UNX.42 Ligand excluded by PLIP UNX.42: 5 residues within 4Å: Chain D: R.10, W.31 Ligands: UNX.39, UNX.40, UNX.41 Ligand excluded by PLIP UNX.43: 2 residues within 4Å: Chain D: R.10, P.34 Ligand excluded by PLIP UNX.44: 3 residues within 4Å: Chain D: P.9, R.10, P.39 Ligand excluded by PLIP UNX.45: 2 residues within 4Å: Chain D: R.73, L.191 Ligand excluded by PLIP UNX.46: 3 residues within 4Å: Chain D: R.27, E.30, R.55 Ligand excluded by PLIP UNX.47: 3 residues within 4Å: Chain D: D.21, Q.25, R.27 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halabelian, L. et al., Crystal structure of HMCES SRAP domain in complex with palindromic 3' overhang DNA. To Be Published

Release Date

2019-05-15

Peptides

Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

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