SMTL ID : 6opm.1

Casposase bound to integration product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain A: M.18, D.61, D.63 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.63 CA.2: 4 residues within 4Å: Chain A: D.63, N.86, K.234 Chain F: C.20 No protein-ligand interaction detected (PLIP) CA.3: 3 residues within 4Å: Chain C: D.63, K.234 Chain E: C.20 No protein-ligand interaction detected (PLIP) CA.4: 3 residues within 4Å: Chain C: M.18, D.63 Chain E: C.20 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.63, H2O.1 CA.5: 1 residues within 4Å: Chain E: C.6 No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Chain F: C.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hickman, A.B. et al., Casposase structure and the mechanistic link between DNA transposition and spacer acquisition by CRISPR-Cas. Elife (2020)

Release Date

2020-02-12

Peptides

CRISPR-associated endonuclease Cas1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CRISPR-associated endonuclease Cas1