SMTL ID : 6oqo.1

CDK6 in complex with Cpd24 N-(5-(6-ethyl-2,6-diazaspiro[3.3]heptan-2-yl)pyridin-2-yl)-5-fluoro-4-(4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl)pyrimidin-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x N1J: N-[5-(6-ethyl-2,6-diazaspiro[3.3]heptan-2-yl)pyridin-2-yl]-5-fluoro-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine(Non-covalent)

N1J.1: 15 residues within 4Å: Chain A: I.9, Y.14, V.17, A.31, K.33, F.88, E.89, H.90, V.91, D.92, Q.139, N.140, L.142, A.152, D.153 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.9, A:Y.14, A:V.17, A:N.140, A:L.142, A:D.153 Hydrogen bonds: A:K.33, A:V.91, A:V.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bronner, S.M. et al., Design of a brain-penetrant CDK4/6 inhibitor for glioblastoma. Bioorg.Med.Chem.Lett. (2019)

Release Date

2020-07-29

Peptides

Cyclin-dependent kinase 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 6

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