- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 1 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.2: 12 residues within 4Å:- Chain A: Q.350, R.352, T.353, K.367, K.370, Y.443, N.534, R.536, D.542
- Ligands: MG.3, MG.4, MG.5
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:T.353, A:Y.443, A:N.534
- Water bridges: A:R.352, A:K.367, A:K.367
- Salt bridges: A:R.352, A:K.367, A:K.367, A:K.370, A:R.536
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 5 residues within 4Å:- Chain A: R.352, K.367, D.542, D.545
- Ligands: POP.2
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.542, A:D.542, A:D.545
MG.4: 5 residues within 4Å:- Chain A: Y.443, Y.449, F.450, R.536
- Ligands: POP.2
No protein-ligand interaction detected (PLIP)MG.5: 5 residues within 4Å:- Chain A: Q.350, Y.452, Y.532, R.536
- Ligands: POP.2
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:Y.452
MG.6: 5 residues within 4Å:- Chain A: T.493, F.495, R.500, Y.732
- Ligands: AMP.1
No protein-ligand interaction detected (PLIP)- 2 x NA: SODIUM ION(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 12 residues within 4Å:- Chain A: A.105, R.106, R.107, V.318, L.478, R.479, G.481, I.549, Y.599, M.653
- Chain B: D.23, N.24
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.478, A:Y.599
EDO.9: 10 residues within 4Å:- Chain A: V.483, P.485, R.505, L.552, F.558, F.563, L.598, N.601, T.602, E.605
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.505, A:N.601
EDO.10: 7 residues within 4Å:- Chain A: L.694, Q.695, Q.698, E.707, Y.708, E.709, F.710
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.698
EDO.11: 6 residues within 4Å:- Chain A: N.289, K.666, Q.667, A.669, N.670, I.671
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.669
- Water bridges: A:N.289, A:Q.667, A:N.670, A:I.671
EDO.12: 6 residues within 4Å:- Chain A: R.636, A.639, N.640, I.671, E.672, F.675
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.636
- Water bridges: A:N.640
EDO.13: 5 residues within 4Å:- Chain A: T.464, E.637, N.640, V.641, T.644
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.637, A:E.637
EDO.14: 8 residues within 4Å:- Chain A: K.219, S.220, I.225, H.226, H.280, L.792, D.793, K.803
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.219, A:S.220, A:S.220, A:H.226
EDO.15: 6 residues within 4Å:- Chain A: H.234, N.236, R.262, D.263, F.292, E.294
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.262
- Water bridges: A:N.236
EDO.16: 8 residues within 4Å:- Chain A: I.134, K.252, A.256, T.574, F.575, F.576, D.577, N.584
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.252, A:A.256, A:N.584
- 2 x CA: CALCIUM ION(Non-covalent)
CA.17: 5 residues within 4Å:- Chain B: D.21, D.23, N.24, N.25, S.27
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.21, B:D.23, B:S.27, H2O.17
CA.18: 6 residues within 4Å:- Chain B: D.94, N.96, G.97, D.98, L.100, I.101
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.94, B:D.98, B:L.100
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Black, M.H. et al., Bacterial pseudokinase catalyzes protein polyglutamylation to inhibit the SidE-family ubiquitin ligases. Science (2019)
- Release Date
- 2019-05-15
- Peptides
- Legionella pneumophila SidJ: A
Calmodulin: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 1 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Black, M.H. et al., Bacterial pseudokinase catalyzes protein polyglutamylation to inhibit the SidE-family ubiquitin ligases. Science (2019)
- Release Date
- 2019-05-15
- Peptides
- Legionella pneumophila SidJ: A
Calmodulin: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B