SMTL ID : 6org.1 (1 other biounit)

Crystal structure of SpGH29

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: H.346, D.349, L.351, S.354, T.443 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.346, A:D.349, A:L.351, A:S.354, A:T.443

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: D.361 No protein-ligand interaction detected (PLIP) EDO.3: 4 residues within 4Å: Chain A: K.2, K.3, L.338, L.439 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.2 EDO.4: 4 residues within 4Å: Chain A: R.57, Q.111, A.112, E.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.111, A:E.115 Water bridges: A:R.57 EDO.5: 6 residues within 4Å: Chain A: E.332, V.333, S.334, E.367, D.369, K.428 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.367, A:D.369 Water bridges: A:D.369, A:D.369 EDO.6: 4 residues within 4Å: Chain A: F.394, S.409, G.410, H.411 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.394, A:T.434

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.7: 7 residues within 4Å: Chain A: H.28, W.39, H.77, Y.123, W.169, D.171, W.264 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.39, A:Y.123 Water bridges: A:W.39, A:Y.123, A:W.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hobbs, J.K. et al., Two complementary alpha-fucosidases fromStreptococcus pneumoniaepromote complete degradation of host-derived carbohydrate antigens. J.Biol.Chem. (2019)

Release Date

2019-07-10

Peptides

Glycoside hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoside hydrolase

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