- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-alpha-D-glucopyranose
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 6 residues within 4Å:- Chain A: L.10, P.11, S.12, Q.15, S.208, F.251
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.10, A:S.12
- Water bridges: A:Q.15, A:Q.15
EDO.4: 4 residues within 4Å:- Chain A: E.186, F.189, R.193, G.206
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.193, A:R.193, A:G.206
- Water bridges: A:E.186, A:E.186
EDO.5: 5 residues within 4Å:- Chain A: S.131, P.132, Y.134, H.135, R.138
2 PLIP interactions:2 interactions with chain A- Water bridges: A:H.130, A:Y.134
EDO.6: 2 residues within 4Å:- Chain A: Q.53, L.303
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.53, A:Q.53
EDO.7: 6 residues within 4Å:- Chain A: R.216, G.217, Y.218, E.280, I.281, H.284
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.217
EDO.8: 4 residues within 4Å:- Chain A: S.52, Q.53, L.54, R.99
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.54, A:R.99, A:R.99
- Water bridges: A:L.54
EDO.9: 1 residues within 4Å:- Chain A: E.310
1 PLIP interactions:1 interactions with chain A- Water bridges: A:E.310
EDO.10: 7 residues within 4Å:- Chain A: L.19, E.22, V.286, G.289, T.290, P.291, K.416
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.18, A:E.22, A:V.286, A:G.289
EDO.11: 4 residues within 4Å:- Chain B: E.22, Y.323, R.382, K.416
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.22, B:R.382
EDO.12: 3 residues within 4Å:- Chain B: H.88, Y.145, A.148
No protein-ligand interaction detected (PLIP)EDO.13: 4 residues within 4Å:- Chain B: E.186, F.189, R.193, G.206
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.193
- Water bridges: B:E.186, B:E.186
EDO.14: 5 residues within 4Å:- Chain B: S.358, D.359, A.360, L.439, P.440
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.359
EDO.15: 6 residues within 4Å:- Chain B: L.54, D.55, A.56, R.57, R.99, E.108
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.55, B:D.55, B:A.56, B:R.57, B:R.99, B:E.108, B:E.108
EDO.16: 3 residues within 4Å:- Chain B: S.274, L.275, E.276
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.274, B:L.275, B:E.276
- Water bridges: B:S.274
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hobbs, J.K. et al., Two complementary alpha-fucosidases fromStreptococcus pneumoniaepromote complete degradation of host-derived carbohydrate antigens. J.Biol.Chem. (2019)
- Release Date
- 2019-07-10
- Peptides
- Glycoside hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-alpha-D-glucopyranose
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hobbs, J.K. et al., Two complementary alpha-fucosidases fromStreptococcus pneumoniaepromote complete degradation of host-derived carbohydrate antigens. J.Biol.Chem. (2019)
- Release Date
- 2019-07-10
- Peptides
- Glycoside hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B