Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 6ote.2
(1 other biounit)
Crystal Structure of Seryl-tRNA synthetase (SerRS) from Cryptosporidium parvum complexed with L-Serylsulfamoyl Adenosine
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.95 Å
Oligo State
homo-dimer
Ligands
2 x
SSA
:
5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE
(Non-covalent)
SSA.1:
20 residues within 4Å:
Chain A:
T.368
,
E.370
,
R.399
,
E.401
,
F.413
,
R.414
,
I.415
,
F.418
,
K.420
,
E.422
,
E.486
,
L.487
,
V.488
,
S.489
,
N.522
,
G.523
,
T.524
,
A.527
,
R.530
Ligands:
MG.2
15
PLIP interactions
:
15 interactions with chain A
Hydrogen bonds:
A:T.368
,
A:R.399
,
A:E.401
,
A:I.415
,
A:K.420
,
A:E.486
,
A:T.524
,
A:R.530
,
A:R.530
Water bridges:
A:S.489
Salt bridges:
A:R.399
pi-Stacking:
A:F.418
,
A:F.418
pi-Cation interactions:
A:R.530
,
A:R.530
SSA.3:
20 residues within 4Å:
Chain B:
T.368
,
E.370
,
R.399
,
E.401
,
F.413
,
R.414
,
I.415
,
F.418
,
K.420
,
E.422
,
E.486
,
L.487
,
V.488
,
S.489
,
N.522
,
G.523
,
T.524
,
A.527
,
R.530
Ligands:
MG.4
15
PLIP interactions
:
15 interactions with chain B
Hydrogen bonds:
B:T.368
,
B:R.399
,
B:E.401
,
B:I.415
,
B:K.420
,
B:E.486
,
B:T.524
,
B:R.530
,
B:R.530
Water bridges:
B:S.489
Salt bridges:
B:R.399
pi-Stacking:
B:F.418
,
B:F.418
pi-Cation interactions:
B:R.530
,
B:R.530
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
5 residues within 4Å:
Chain A:
K.471
,
D.473
,
E.486
,
S.489
Ligands:
SSA.1
3
PLIP interactions
:
2 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:E.486
,
A:S.489
,
H
2
O.1
MG.4:
5 residues within 4Å:
Chain B:
K.471
,
D.473
,
E.486
,
S.489
Ligands:
SSA.3
3
PLIP interactions
:
2 interactions with chain B
,
1 Ligand-Water interactions
Metal complexes:
B:E.486
,
B:S.489
,
H
2
O.1
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Dranow, D.M. et al., Crystal Structure of Seryl-tRNA synthetase (SerRS) from Cryptosporidium parvum complexed with L-Serylsulfamoyl Adenosine. to be published
Release Date
2019-05-15
Peptides
Seryl-tRNA synthetase, cytoplasmic:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Seryl-tRNA synthetase, cytoplasmic
Toggle Identical (AB)
Related Entries With Identical Sequence
6ote.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme