SMTL ID : 6otf.2 (3 other biounits)

Symmetric reconstruction of human norovirus GII.2 Snow Mountain Virus Strain VLP in T=3 symmetry

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-15-mer

Ligands

15 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.293, L.294, Q.295, H.299, D.381 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.293, A:H.299 ZN.2: 4 residues within 4Å: Chain B: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.293, B:H.299 ZN.3: 4 residues within 4Å: Chain C: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.293, C:H.299 ZN.4: 5 residues within 4Å: Chain D: H.293, L.294, Q.295, H.299, D.381 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.293, D:H.299 ZN.5: 4 residues within 4Å: Chain E: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.293, E:H.299 ZN.6: 4 residues within 4Å: Chain F: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:H.293, F:H.299 ZN.7: 5 residues within 4Å: Chain G: H.293, L.294, Q.295, H.299, D.381 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:H.293, G:H.299 ZN.8: 4 residues within 4Å: Chain H: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:H.293, H:H.299 ZN.9: 4 residues within 4Å: Chain I: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:H.293, I:H.299 ZN.10: 5 residues within 4Å: Chain J: H.293, L.294, Q.295, H.299, D.381 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:H.293, J:H.299 ZN.11: 4 residues within 4Å: Chain K: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:H.293, K:H.299 ZN.12: 4 residues within 4Å: Chain L: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:H.293, L:H.299 ZN.13: 5 residues within 4Å: Chain M: H.293, L.294, Q.295, H.299, D.381 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:H.293, M:H.299 ZN.14: 4 residues within 4Å: Chain N: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:H.293, N:H.299 ZN.15: 4 residues within 4Å: Chain O: H.293, L.294, Q.295, H.299 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:H.293, O:H.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jung, J. et al., High-resolution cryo-EM structures of outbreak strain human norovirus shells reveal size variations. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-06-26

Peptides

Viral protein 1: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
B

E
A

F
C

G
B

H
A

I
C

J
B

K
A

L
C

M
B

N
A

O
C

Viral protein 1

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