SMTL ID : 6ou1.2 (1 other biounit)

Crystal Structure of the Computationally-derived 21-Variant of the Myocilin Olfactomedin Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.153, N.201, A.202, I.250, D.251 Ligands: NA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.153, A:D.153, A:I.250, H2O.1, H2O.3

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: G.99, A.100, V.101, D.153, L.154, D.251 Ligands: CA.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.154, A:D.251

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: I.90, L.91, P.92, Y.120, E.125, T.126 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.90, A:E.125, A:E.125 Water bridges: A:I.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hill, S.E. et al., Stable calcium-free myocilin olfactomedin domain variants reveal challenges in differentiating between benign and glaucoma-causing mutations. J.Biol.Chem. (2019)

Release Date

2019-07-03

Peptides

Myocilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Myocilin

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