- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 5 residues within 4Å:- Chain A: F.117, H.139, R.140, R.165
- Chain B: R.287
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.140, A:R.165
- Water bridges: A:E.137, B:R.287
- Salt bridges: A:R.140, B:R.287
PO4.7: 6 residues within 4Å:- Chain A: W.171, R.173, G.186, R.187, E.209
- Ligands: NAP.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.173, A:R.187
- Water bridges: A:R.173
PO4.9: 5 residues within 4Å:- Chain A: R.287
- Chain B: F.117, H.139, R.140, R.165
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.140, B:R.165
- Water bridges: B:E.137, A:R.287
- Salt bridges: B:R.140, A:R.287
PO4.14: 6 residues within 4Å:- Chain B: W.171, R.173, G.186, R.187, E.209
- Ligands: NAP.10
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.173, B:R.187
- Water bridges: B:R.173
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.3: 40 residues within 4Å:- Chain A: A.71, G.72, V.73, R.95, M.101, M.105, G.149, A.150, G.151, V.152, L.153, G.154, W.171, S.172, R.173, T.174, K.176, G.186, R.187, L.203, L.204, P.205, N.206, T.207, E.209, T.210, L.231, A.232, R.233, D.257, V.258, H.281, V.282, A.283, A.284, I.285, R.316, Y.318
- Ligands: GLV.4, PO4.7
32 PLIP interactions:32 interactions with chain A- Hydrophobic interactions: A:A.71, A:L.153, A:A.284
- Hydrogen bonds: A:A.150, A:A.150, A:V.152, A:L.153, A:R.173, A:T.174, A:T.174, A:T.174, A:H.281, A:A.283, A:A.284, A:A.284, A:Y.318
- Water bridges: A:A.71, A:D.74, A:R.95, A:R.95, A:G.151, A:G.154, A:R.173, A:R.173, A:K.176, A:K.176, A:N.206, A:T.207, A:E.209
- Salt bridges: A:R.95, A:R.95, A:K.176
NAP.10: 40 residues within 4Å:- Chain B: A.71, G.72, V.73, R.95, M.101, M.105, G.149, A.150, G.151, V.152, L.153, G.154, W.171, S.172, R.173, T.174, K.176, G.186, R.187, L.203, L.204, P.205, N.206, T.207, E.209, T.210, L.231, A.232, R.233, D.257, V.258, H.281, V.282, A.283, A.284, I.285, R.316, Y.318
- Ligands: GLV.11, PO4.14
33 PLIP interactions:33 interactions with chain B- Hydrophobic interactions: B:A.71, B:L.153, B:A.284
- Hydrogen bonds: B:A.150, B:A.150, B:V.152, B:L.153, B:R.173, B:T.174, B:T.174, B:T.174, B:D.257, B:H.281, B:A.283, B:A.284, B:A.284, B:Y.318
- Water bridges: B:A.71, B:D.74, B:R.95, B:R.95, B:G.151, B:G.154, B:R.173, B:R.173, B:K.176, B:K.176, B:N.206, B:T.207, B:E.209
- Salt bridges: B:R.95, B:R.95, B:K.176
- 2 x GLV: GLYOXYLIC ACID(Non-covalent)
GLV.4: 9 residues within 4Å:- Chain A: W.51, G.70, A.71, G.72, M.101, R.233, H.281, A.284
- Ligands: NAP.3
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:A.71, A:G.72, A:R.233, A:R.233, A:H.281
- Water bridges: A:T.286
- Salt bridges: A:R.233
GLV.11: 9 residues within 4Å:- Chain B: W.51, G.70, A.71, G.72, M.101, R.233, H.281, A.284
- Ligands: NAP.10
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:A.71, B:G.72, B:R.233, B:R.233, B:H.281
- Water bridges: B:T.286
- Salt bridges: B:R.233
- 2 x K: POTASSIUM ION(Non-covalent)
K.5: 5 residues within 4Å:- Chain A: E.239, L.264, S.268, P.269, L.270
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.239, A:S.268, H2O.6
K.12: 5 residues within 4Å:- Chain B: E.239, L.264, S.268, P.269, L.270
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.239, B:S.268, H2O.17
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vuksanovic, N., 2.1 Angstrom structure of wild type Glyoxylate/Hydroxypyruvate reductase A from Escherichia Coli in complex with glyoxylate and NADP. To Be Published
- Release Date
- 2020-05-13
- Peptides
- Glyoxylate/hydroxypyruvate reductase A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x GLV: GLYOXYLIC ACID(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vuksanovic, N., 2.1 Angstrom structure of wild type Glyoxylate/Hydroxypyruvate reductase A from Escherichia Coli in complex with glyoxylate and NADP. To Be Published
- Release Date
- 2020-05-13
- Peptides
- Glyoxylate/hydroxypyruvate reductase A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A