SMTL ID : 6owh.1

Crystal structure of MYST acetyltransferase domain in complex with inhibitor 92

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.35, C.38, H.51, C.55 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.35, A:C.38, A:H.51, A:C.55

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: W.17, F.95, L.96, M.143, I.144, Q.149, S.179, L.181 Ligands: NBJ.4, DMS.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.144, A:I.144, A:S.179 GOL.3: 6 residues within 4Å: Chain A: R.150, L.181, L.184, S.185, S.188 Ligands: NBJ.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.185, A:S.188

1 x NBJ: N'-[(2-fluorophenyl)sulfonyl]-3-iodobenzohydrazide(Non-covalent)

NBJ.4: 15 residues within 4Å: Chain A: I.142, I.144, Q.149, R.150, R.151, G.152, Y.153, G.154, R.155, L.181, G.182, S.185 Ligands: GOL.2, GOL.3, DMS.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.144, A:Q.149, A:R.155, A:L.181 Hydrogen bonds: A:R.150, A:G.152, A:G.154, A:R.155, A:S.185, A:S.185 Water bridges: A:R.151, A:R.151

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 7 residues within 4Å: Chain A: L.96, I.142, L.178, S.179, G.182 Ligands: GOL.2, NBJ.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priebbenow, D.L. et al., Discovery of Acylsulfonohydrazide-Derived Inhibitors of the Lysine Acetyltransferase, KAT6A, as Potent Senescence-Inducing Anti-Cancer Agents. J.Med.Chem. (2020)

Release Date

2020-04-01

Peptides

Histone acetyltransferase KAT8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase KAT8

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