SMTL ID : 6owv.1

Crystal structure of a Human Cardiac Calsequestrin Filament

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.239, K.264 Chain D: R.239, K.264 Ligands: SO4.82 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A Salt bridges: D:R.239, D:K.264, A:R.239, A:K.264 SO4.2: 3 residues within 4Å: Chain A: K.264 Chain D: K.264 Ligands: SO4.83 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Salt bridges: D:K.264, A:K.264 SO4.28: 5 residues within 4Å: Chain B: R.239, K.264 Chain F: R.239, K.264 Ligands: SO4.136 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain B Salt bridges: F:R.239, F:K.264, B:R.239, B:K.264 SO4.29: 3 residues within 4Å: Chain B: K.264 Chain F: K.264 Ligands: SO4.137 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F Salt bridges: B:K.264, F:K.264 SO4.55: 5 residues within 4Å: Chain C: R.239, K.264 Chain E: R.239, K.264 Ligands: SO4.109 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain C Salt bridges: E:R.239, E:K.264, C:R.239, C:K.264 SO4.56: 3 residues within 4Å: Chain C: K.264 Chain E: K.264 Ligands: SO4.110 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Salt bridges: E:K.264, C:K.264 SO4.82: 5 residues within 4Å: Chain A: R.239, K.264 Chain D: R.239, K.264 Ligands: SO4.1 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A Salt bridges: D:R.239, D:K.264, A:R.239, A:K.264 SO4.83: 3 residues within 4Å: Chain A: K.264 Chain D: K.264 Ligands: SO4.2 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Salt bridges: D:K.264, A:K.264 SO4.109: 5 residues within 4Å: Chain C: R.239, K.264 Chain E: R.239, K.264 Ligands: SO4.55 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain E Salt bridges: C:R.239, C:K.264, E:R.239, E:K.264 SO4.110: 3 residues within 4Å: Chain C: K.264 Chain E: K.264 Ligands: SO4.56 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Salt bridges: E:K.264, C:K.264 SO4.136: 5 residues within 4Å: Chain B: R.239, K.264 Chain F: R.239, K.264 Ligands: SO4.28 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain B Salt bridges: F:R.239, F:K.264, B:R.239, B:K.264 SO4.137: 3 residues within 4Å: Chain B: K.264 Chain F: K.264 Ligands: SO4.29 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F Salt bridges: B:K.264, F:K.264

150 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: Y.305, K.308 Chain D: Q.70 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: K.308 Chain B: K.160 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: K.160, S.161, S.164 Chain E: K.75 Ligands: CL.63 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: I.256, H.257, I.258, S.290 Ligands: CL.26 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: E.172, E.175 Chain E: K.35 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: D.151, F.208, K.264, K.277 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: E.307, D.313 Chain B: S.161 Chain D: K.75 Ligands: CL.32 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain A: P.133, I.181, K.182, F.183 Ligands: CL.25 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain D: A.118, A.119 Ligands: CL.92 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: E.274, K.277 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain A: E.142 Chain D: D.268, D.337, D.338 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain A: E.271, E.274, I.275 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain A: K.160, S.161, F.187 Chain C: D.313, R.316 Ligands: CL.16 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain A: S.161, E.162, F.187 Ligands: CL.15 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain A: I.136, S.138 Chain D: D.338 Ligand excluded by PLIP CL.18: 6 residues within 4Å: Chain A: L.34, Y.37, D.38, L.105, K.106, G.107 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain A: K.198, M.199 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain A: E.135, I.136 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain A: K.168, A.169, E.172 Chain E: K.36 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain A: K.160, N.200 Chain C: K.311 Ligand excluded by PLIP CL.23: 1 residues within 4Å: Chain A: Y.166 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain A: D.38 Chain E: E.162, Y.167, K.168 Ligand excluded by PLIP CL.25: 4 residues within 4Å: Chain A: E.135, K.182, F.183 Ligands: CL.10 Ligand excluded by PLIP CL.26: 4 residues within 4Å: Chain A: D.288, L.289, S.290 Ligands: CL.6 Ligand excluded by PLIP CL.27: 3 residues within 4Å: Chain A: D.108, R.109, E.175 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain B: Y.305, K.308 Chain F: Q.70 Ligand excluded by PLIP CL.31: 1 residues within 4Å: Chain B: K.308 Ligand excluded by PLIP CL.32: 5 residues within 4Å: Chain B: K.160, S.161, S.164 Chain D: K.75 Ligands: CL.9 Ligand excluded by PLIP CL.33: 5 residues within 4Å: Chain B: I.256, H.257, I.258, S.290 Ligands: CL.53 Ligand excluded by PLIP CL.34: 3 residues within 4Å: Chain B: E.172, E.175 Chain D: K.35 Ligand excluded by PLIP CL.35: 4 residues within 4Å: Chain B: D.151, F.208, K.264, K.277 Ligand excluded by PLIP CL.36: 3 residues within 4Å: Chain B: E.307, D.313 Chain F: K.75 Ligand excluded by PLIP CL.37: 5 residues within 4Å: Chain B: P.133, I.181, K.182, F.183 Ligands: CL.52 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain F: A.118, A.119 Ligands: CL.146 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain B: E.274, K.277 Ligand excluded by PLIP CL.40: 4 residues within 4Å: Chain B: E.142 Chain F: D.268, D.337, D.338 Ligand excluded by PLIP CL.41: 3 residues within 4Å: Chain B: E.271, E.274, I.275 Ligand excluded by PLIP CL.42: 6 residues within 4Å: Chain A: D.313, R.316 Chain B: K.160, S.161, F.187 Ligands: CL.43 Ligand excluded by PLIP CL.43: 4 residues within 4Å: Chain B: S.161, E.162, F.187 Ligands: CL.42 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain B: I.136, S.138 Chain F: D.338 Ligand excluded by PLIP CL.45: 6 residues within 4Å: Chain B: L.34, Y.37, D.38, L.105, K.106, G.107 Ligand excluded by PLIP CL.46: 2 residues within 4Å: Chain B: K.198, M.199 Ligand excluded by PLIP CL.47: 2 residues within 4Å: Chain B: E.135, I.136 Ligand excluded by PLIP CL.48: 4 residues within 4Å: Chain B: K.168, A.169, E.172 Chain D: K.36 Ligand excluded by PLIP CL.49: 3 residues within 4Å: Chain A: K.311 Chain B: K.160, N.200 Ligand excluded by PLIP CL.50: 1 residues within 4Å: Chain B: Y.166 Ligand excluded by PLIP CL.51: 4 residues within 4Å: Chain B: D.38 Chain D: E.162, Y.167, K.168 Ligand excluded by PLIP CL.52: 4 residues within 4Å: Chain B: E.135, K.182, F.183 Ligands: CL.37 Ligand excluded by PLIP CL.53: 4 residues within 4Å: Chain B: D.288, L.289, S.290 Ligands: CL.33 Ligand excluded by PLIP CL.54: 3 residues within 4Å: Chain B: D.108, R.109, E.175 Ligand excluded by PLIP CL.57: 3 residues within 4Å: Chain C: Y.305, K.308 Chain E: Q.70 Ligand excluded by PLIP CL.58: 2 residues within 4Å: Chain A: K.160 Chain C: K.308 Ligand excluded by PLIP CL.59: 3 residues within 4Å: Chain C: K.160, S.161, S.164 Ligand excluded by PLIP CL.60: 5 residues within 4Å: Chain C: I.256, H.257, I.258, S.290 Ligands: CL.80 Ligand excluded by PLIP CL.61: 2 residues within 4Å: Chain C: E.172, E.175 Ligand excluded by PLIP CL.62: 4 residues within 4Å: Chain C: D.151, F.208, K.264, K.277 Ligand excluded by PLIP CL.63: 5 residues within 4Å: Chain A: S.161 Chain C: E.307, D.313 Chain E: K.75 Ligands: CL.5 Ligand excluded by PLIP CL.64: 5 residues within 4Å: Chain C: P.133, I.181, K.182, F.183 Ligands: CL.79 Ligand excluded by PLIP CL.65: 3 residues within 4Å: Chain E: A.118, A.119 Ligands: CL.119 Ligand excluded by PLIP CL.66: 2 residues within 4Å: Chain C: E.274, K.277 Ligand excluded by PLIP CL.67: 4 residues within 4Å: Chain C: E.142 Chain E: D.268, D.337, D.338 Ligand excluded by PLIP CL.68: 3 residues within 4Å: Chain C: E.271, E.274, I.275 Ligand excluded by PLIP CL.69: 4 residues within 4Å: Chain C: K.160, S.161, F.187 Ligands: CL.70 Ligand excluded by PLIP CL.70: 4 residues within 4Å: Chain C: S.161, E.162, F.187 Ligands: CL.69 Ligand excluded by PLIP CL.71: 3 residues within 4Å: Chain C: I.136, S.138 Chain E: D.338 Ligand excluded by PLIP CL.72: 6 residues within 4Å: Chain C: L.34, Y.37, D.38, L.105, K.106, G.107 Ligand excluded by PLIP CL.73: 2 residues within 4Å: Chain C: K.198, M.199 Ligand excluded by PLIP CL.74: 2 residues within 4Å: Chain C: E.135, I.136 Ligand excluded by PLIP CL.75: 3 residues within 4Å: Chain C: K.168, A.169, E.172 Ligand excluded by PLIP CL.76: 2 residues within 4Å: Chain C: K.160, N.200 Ligand excluded by PLIP CL.77: 1 residues within 4Å: Chain C: Y.166 Ligand excluded by PLIP CL.78: 1 residues within 4Å: Chain C: D.38 Ligand excluded by PLIP CL.79: 4 residues within 4Å: Chain C: E.135, K.182, F.183 Ligands: CL.64 Ligand excluded by PLIP CL.80: 4 residues within 4Å: Chain C: D.288, L.289, S.290 Ligands: CL.60 Ligand excluded by PLIP CL.81: 3 residues within 4Å: Chain C: D.108, R.109, E.175 Ligand excluded by PLIP CL.84: 3 residues within 4Å: Chain A: Q.70 Chain D: Y.305, K.308 Ligand excluded by PLIP CL.85: 2 residues within 4Å: Chain D: K.308 Chain E: K.160 Ligand excluded by PLIP CL.86: 5 residues within 4Å: Chain B: K.75 Chain D: K.160, S.161, S.164 Ligands: CL.144 Ligand excluded by PLIP CL.87: 5 residues within 4Å: Chain D: I.256, H.257, I.258, S.290 Ligands: CL.107 Ligand excluded by PLIP CL.88: 3 residues within 4Å: Chain B: K.35 Chain D: E.172, E.175 Ligand excluded by PLIP CL.89: 4 residues within 4Å: Chain D: D.151, F.208, K.264, K.277 Ligand excluded by PLIP CL.90: 5 residues within 4Å: Chain A: K.75 Chain D: E.307, D.313 Chain E: S.161 Ligands: CL.113 Ligand excluded by PLIP CL.91: 5 residues within 4Å: Chain D: P.133, I.181, K.182, F.183 Ligands: CL.106 Ligand excluded by PLIP CL.92: 3 residues within 4Å: Chain A: A.118, A.119 Ligands: CL.11 Ligand excluded by PLIP CL.93: 2 residues within 4Å: Chain D: E.274, K.277 Ligand excluded by PLIP CL.94: 4 residues within 4Å: Chain A: D.268, D.337, D.338 Chain D: E.142 Ligand excluded by PLIP CL.95: 3 residues within 4Å: Chain D: E.271, E.274, I.275 Ligand excluded by PLIP CL.96: 6 residues within 4Å: Chain D: K.160, S.161, F.187 Chain F: D.313, R.316 Ligands: CL.97 Ligand excluded by PLIP CL.97: 4 residues within 4Å: Chain D: S.161, E.162, F.187 Ligands: CL.96 Ligand excluded by PLIP CL.98: 3 residues within 4Å: Chain A: D.338 Chain D: I.136, S.138 Ligand excluded by PLIP CL.99: 6 residues within 4Å: Chain D: L.34, Y.37, D.38, L.105, K.106, G.107 Ligand excluded by PLIP CL.100: 2 residues within 4Å: Chain D: K.198, M.199 Ligand excluded by PLIP CL.101: 2 residues within 4Å: Chain D: E.135, I.136 Ligand excluded by PLIP CL.102: 4 residues within 4Å: Chain B: K.36 Chain D: K.168, A.169, E.172 Ligand excluded by PLIP CL.103: 3 residues within 4Å: Chain D: K.160, N.200 Chain F: K.311 Ligand excluded by PLIP CL.104: 1 residues within 4Å: Chain D: Y.166 Ligand excluded by PLIP CL.105: 4 residues within 4Å: Chain B: E.162, Y.167, K.168 Chain D: D.38 Ligand excluded by PLIP CL.106: 4 residues within 4Å: Chain D: E.135, K.182, F.183 Ligands: CL.91 Ligand excluded by PLIP CL.107: 4 residues within 4Å: Chain D: D.288, L.289, S.290 Ligands: CL.87 Ligand excluded by PLIP CL.108: 3 residues within 4Å: Chain D: D.108, R.109, E.175 Ligand excluded by PLIP CL.111: 3 residues within 4Å: Chain C: Q.70 Chain E: Y.305, K.308 Ligand excluded by PLIP CL.112: 1 residues within 4Å: Chain E: K.308 Ligand excluded by PLIP CL.113: 5 residues within 4Å: Chain A: K.75 Chain E: K.160, S.161, S.164 Ligands: CL.90 Ligand excluded by PLIP CL.114: 5 residues within 4Å: Chain E: I.256, H.257, I.258, S.290 Ligands: CL.134 Ligand excluded by PLIP CL.115: 3 residues within 4Å: Chain A: K.35 Chain E: E.172, E.175 Ligand excluded by PLIP CL.116: 4 residues within 4Å: Chain E: D.151, F.208, K.264, K.277 Ligand excluded by PLIP CL.117: 3 residues within 4Å: Chain C: K.75 Chain E: E.307, D.313 Ligand excluded by PLIP CL.118: 5 residues within 4Å: Chain E: P.133, I.181, K.182, F.183 Ligands: CL.133 Ligand excluded by PLIP CL.119: 3 residues within 4Å: Chain C: A.118, A.119 Ligands: CL.65 Ligand excluded by PLIP CL.120: 2 residues within 4Å: Chain E: E.274, K.277 Ligand excluded by PLIP CL.121: 4 residues within 4Å: Chain C: D.268, D.337, D.338 Chain E: E.142 Ligand excluded by PLIP CL.122: 3 residues within 4Å: Chain E: E.271, E.274, I.275 Ligand excluded by PLIP CL.123: 6 residues within 4Å: Chain D: D.313, R.316 Chain E: K.160, S.161, F.187 Ligands: CL.124 Ligand excluded by PLIP CL.124: 4 residues within 4Å: Chain E: S.161, E.162, F.187 Ligands: CL.123 Ligand excluded by PLIP CL.125: 3 residues within 4Å: Chain C: D.338 Chain E: I.136, S.138 Ligand excluded by PLIP CL.126: 6 residues within 4Å: Chain E: L.34, Y.37, D.38, L.105, K.106, G.107 Ligand excluded by PLIP CL.127: 2 residues within 4Å: Chain E: K.198, M.199 Ligand excluded by PLIP CL.128: 2 residues within 4Å: Chain E: E.135, I.136 Ligand excluded by PLIP CL.129: 4 residues within 4Å: Chain A: K.36 Chain E: K.168, A.169, E.172 Ligand excluded by PLIP CL.130: 3 residues within 4Å: Chain D: K.311 Chain E: K.160, N.200 Ligand excluded by PLIP CL.131: 1 residues within 4Å: Chain E: Y.166 Ligand excluded by PLIP CL.132: 4 residues within 4Å: Chain A: E.162, Y.167, K.168 Chain E: D.38 Ligand excluded by PLIP CL.133: 4 residues within 4Å: Chain E: E.135, K.182, F.183 Ligands: CL.118 Ligand excluded by PLIP CL.134: 4 residues within 4Å: Chain E: D.288, L.289, S.290 Ligands: CL.114 Ligand excluded by PLIP CL.135: 3 residues within 4Å: Chain E: D.108, R.109, E.175 Ligand excluded by PLIP CL.138: 3 residues within 4Å: Chain B: Q.70 Chain F: Y.305, K.308 Ligand excluded by PLIP CL.139: 2 residues within 4Å: Chain D: K.160 Chain F: K.308 Ligand excluded by PLIP CL.140: 3 residues within 4Å: Chain F: K.160, S.161, S.164 Ligand excluded by PLIP CL.141: 5 residues within 4Å: Chain F: I.256, H.257, I.258, S.290 Ligands: CL.161 Ligand excluded by PLIP CL.142: 2 residues within 4Å: Chain F: E.172, E.175 Ligand excluded by PLIP CL.143: 4 residues within 4Å: Chain F: D.151, F.208, K.264, K.277 Ligand excluded by PLIP CL.144: 5 residues within 4Å: Chain B: K.75 Chain D: S.161 Chain F: E.307, D.313 Ligands: CL.86 Ligand excluded by PLIP CL.145: 5 residues within 4Å: Chain F: P.133, I.181, K.182, F.183 Ligands: CL.160 Ligand excluded by PLIP CL.146: 3 residues within 4Å: Chain B: A.118, A.119 Ligands: CL.38 Ligand excluded by PLIP CL.147: 2 residues within 4Å: Chain F: E.274, K.277 Ligand excluded by PLIP CL.148: 4 residues within 4Å: Chain B: D.268, D.337, D.338 Chain F: E.142 Ligand excluded by PLIP CL.149: 3 residues within 4Å: Chain F: E.271, E.274, I.275 Ligand excluded by PLIP CL.150: 4 residues within 4Å: Chain F: K.160, S.161, F.187 Ligands: CL.151 Ligand excluded by PLIP CL.151: 4 residues within 4Å: Chain F: S.161, E.162, F.187 Ligands: CL.150 Ligand excluded by PLIP CL.152: 3 residues within 4Å: Chain B: D.338 Chain F: I.136, S.138 Ligand excluded by PLIP CL.153: 6 residues within 4Å: Chain F: L.34, Y.37, D.38, L.105, K.106, G.107 Ligand excluded by PLIP CL.154: 2 residues within 4Å: Chain F: K.198, M.199 Ligand excluded by PLIP CL.155: 2 residues within 4Å: Chain F: E.135, I.136 Ligand excluded by PLIP CL.156: 3 residues within 4Å: Chain F: K.168, A.169, E.172 Ligand excluded by PLIP CL.157: 2 residues within 4Å: Chain F: K.160, N.200 Ligand excluded by PLIP CL.158: 1 residues within 4Å: Chain F: Y.166 Ligand excluded by PLIP CL.159: 1 residues within 4Å: Chain F: D.38 Ligand excluded by PLIP CL.160: 4 residues within 4Å: Chain F: E.135, K.182, F.183 Ligands: CL.145 Ligand excluded by PLIP CL.161: 4 residues within 4Å: Chain F: D.288, L.289, S.290 Ligands: CL.141 Ligand excluded by PLIP CL.162: 3 residues within 4Å: Chain F: D.108, R.109, E.175 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Titus, E.W. et al., The structure of a calsequestrin filament reveals mechanisms of familial arrhythmia. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-07-01

Peptides

Calsequestrin-2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Calsequestrin-2

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