SMTL ID : 6oyt.2 (1 other biounit)

ASK1 kinase domain in complex with GS-4997

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

homo-dimer

Ligands

2 x NJV: 5-(4-cyclopropyl-1H-imidazol-1-yl)-2-fluoro-4-methyl-N-{6-[4-(propan-2-yl)-4H-1,2,4-triazol-3-yl]pyridin-2-yl}benzamide(Non-covalent)

NJV.1: 19 residues within 4Å: Chain A: L.21, G.22, G.24, V.29, A.42, K.44, M.89, E.90, Q.91, V.92, P.93, G.94, G.95, D.142, L.145, S.156, D.157 Chain B: Y.149 Ligands: NJV.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.29, A:A.42, A:L.145, A:L.145 Hydrogen bonds: A:K.44, A:V.92, A:D.157 NJV.6: 21 residues within 4Å: Chain A: Y.149 Chain B: L.21, G.22, K.23, G.24, V.29, A.42, K.44, V.73, M.89, E.90, Q.91, V.92, P.93, G.94, G.95, D.142, L.145, S.156, D.157 Ligands: NJV.1 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.21, B:L.21, B:V.29, B:A.42, B:V.73, B:L.145, B:L.145 Hydrogen bonds: B:V.92, B:D.157, A:Y.149

7 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.3: 3 residues within 4Å: Chain A: Q.38 Chain B: K.104, W.105 No protein-ligand interaction detected (PLIP) ACT.4: 1 residues within 4Å: Chain A: K.104 No protein-ligand interaction detected (PLIP) ACT.5: 1 residues within 4Å: Chain B: D.257 No protein-ligand interaction detected (PLIP) ACT.7: 3 residues within 4Å: Chain B: E.184, I.186, Y.193 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.193 Hydrogen bonds: B:I.186 ACT.8: 4 residues within 4Å: Chain B: D.34, N.37, I.41, L.76 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.41, B:L.76 Hydrogen bonds: B:D.34, B:N.37 ACT.9: 3 residues within 4Å: Chain B: P.47, R.49, S.54 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Himmelbauer, M.K. et al., Rational Design and Optimization of a Novel Class of Macrocyclic Apoptosis Signal-Regulating Kinase 1 Inhibitors. J.Med.Chem. (2019)

Release Date

2019-11-27

Peptides

Mitogen-activated protein kinase kinase kinase 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Mitogen-activated protein kinase kinase kinase 5

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