SMTL ID : 6oyz.1 (3 other biounits)

Crystal structure of MraY bound to capuramycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.62 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NKM: (2~{S},3~{S},4~{S})-2-[(1~{R})-2-azanyl-1-[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-methoxy-4-oxidanyl-oxolan-2-yl]-2-oxidanylidene-ethoxy]-3,4-bis(oxidanyl)-~{N}-[(3~{S})-2-oxidanylideneazepan-3-yl]-3,4-dihydro-2~{H}-pyran-6-carboxamide(Non-covalent)

NKM.1: 14 residues within 4Å: Chain B: K.76, T.81, K.127, L.128, K.131, D.199, G.200, L.201, D.202, N.261, F.268, M.269, G.270, D.271 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.76, B:T.81, B:D.202, B:M.269, B:D.271 pi-Stacking: B:F.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mashalidis, E.H. et al., Chemical logic of MraY inhibition by antibacterial nucleoside natural products. Nat Commun (2019)

Release Date

2019-07-10

Peptides

MraYAA nanobody: A
Phospho-N-acetylmuramoyl-pentapeptide-transferase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

Membrane

We predict this structure to be a membrane protein.
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MraYAA nanobody

Phospho-N-acetylmuramoyl-pentapeptide-transferase

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