SMTL ID : 6oz7.2 (1 other biounit)

Putative oxidoreductase from Escherichia coli str. K-12

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: Q.132 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:Q.132, H2O.1, H2O.7, H2O.7 CA.4: 1 residues within 4Å: Chain B: Q.132 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:Q.132, H2O.11, H2O.15, H2O.16, H2O.16 CA.5: 1 residues within 4Å: Chain C: Q.132 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:Q.132, H2O.19, H2O.21, H2O.24 CA.7: 1 residues within 4Å: Chain D: E.38 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.38, D:E.38, H2O.31, H2O.32, H2O.33

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: H.143, G.185, A.186, F.244 Chain C: Q.250 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:Q.250 Water bridges: A:G.185, A:G.185, A:I.187 EDO.3: 4 residues within 4Å: Chain A: Q.250 Chain C: H.143, A.186, F.244 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Q.250, C:H.143 EDO.6: 5 residues within 4Å: Chain B: H.143, G.185, A.186, F.244 Chain D: Q.250 4 PLIP interactions: 4 interactions with chain B Water bridges: B:S.141, B:Y.154, B:G.185, B:I.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Putative oxidoreductase from Escherichia coli str. K-12. to be published

Release Date

2019-05-29

Peptides

Uncharacterized oxidoreductase YohF: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Uncharacterized oxidoreductase YohF

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