SMTL ID : 6oz9.1

Ebola virus glycoprotein in complex with EBOV-520 Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.46 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: L.40, E.126, G.127, A.128, V.150 Chain B: Q.6, P.7, N.61, T.64 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 9 residues within 4Å: Chain E: L.40, E.126, G.127, A.128, V.150 Chain F: Q.6, P.7, N.61, T.64 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 9 residues within 4Å: Chain I: L.40, E.126, G.127, A.128, V.150 Chain J: Q.6, P.7, N.61, T.64 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: D.97, G.98, I.99, R.100 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.98, A:R.100, A:R.100 GOL.4: 4 residues within 4Å: Chain E: D.97, G.98, I.99, R.100 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:G.98, E:R.100, E:R.100 GOL.6: 4 residues within 4Å: Chain I: D.97, G.98, I.99, R.100 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:G.98, I:R.100, I:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gilchuk, P. et al., Analysis of a Therapeutic Antibody Cocktail Reveals Determinants for Cooperative and Broad Ebolavirus Neutralization. Immunity (2020)

Release Date

2020-03-11

Peptides

Small secreted glycoprotein sGP: AEI
Envelope glycoprotein: BFJ
EBOV-520 Fab light chain: CGK
EBOV-520 Fab heavy chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
L

G
L

K
L

D
H

H
H

L
H

Small secreted glycoprotein sGP

Envelope glycoprotein

EBOV-520 Fab light chain

EBOV-520 Fab heavy chain

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