SMTL ID : 6p0g.1

N-terminal domain of Thermococcus Gammatolerans McrB bound to m5C DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x DT- DA- DC- DC- DG- DG: DNA (5'-D(P*TP*AP*CP*CP*GP*G)-3')(Non-covalent)

DT-DA-DC-DC-DG-DG.1: 18 residues within 4Å: Chain A: T.14, E.16, N.19, W.53, G.54, R.55, S.56, Y.61, R.78, R.81, F.121, I.154 Ligands: DA-DC-DC-DG-DG-DT.2, DA-DC-DC-DG-DG-DT.2, DA-DC-DC-DG-DG-DT.2, DA-DC-DC-DG-DG-DT.2, DA-DC-DC-DG-DG-DT.2, DA-DC-DC-DG-DG-DT.2 Protein-ligand interaction information (PLIP) not available

1 x DA- DC- DC- DG- DG- DT: DNA (5'-D(P*AP*CP*CP*GP*GP*T)-3')(Non-covalent)

DA-DC-DC-DG-DG-DT.2: 16 residues within 4Å: Chain A: Y.61, R.81, N.82, K.83, Y.147, N.148, Y.151, Y.157, V.158, K.159, R.162 Ligands: DT-DA-DC-DC-DG-DG.1, DT-DA-DC-DC-DG-DG.1, DT-DA-DC-DC-DG-DG.1, DT-DA-DC-DC-DG-DG.1, DT-DA-DC-DC-DG-DG.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hosford, C.J. et al., The structure of theThermococcus gammatoleransMcrB N-terminal domain reveals a new mode of substrate recognition and specificity among McrB homologs. J.Biol.Chem. (2020)

Release Date

2019-12-18

Peptides

GTPase subunit of restriction endonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GTPase subunit of restriction endonuclease

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