SMTL ID : 6p0r.1

Methyltransferase domain of human suppressor of variegation 3-9 homolog 2 (SUV39H2) in complex with OTS186935 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NM4: (3S)-1-[2-(5-chloro-2,4-dimethoxyphenyl)imidazo[1,2-a]pyridin-7-yl]-N-[(pyridin-4-yl)methyl]pyrrolidin-3-amine(Non-covalent)

NM4.1: 13 residues within 4Å: Chain A: Y.169, I.191, T.192, Y.193, L.194, F.195, S.215, H.216, V.218, V.228, L.245, F.259, Y.261 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.193, A:F.259, A:Y.261, A:Y.261 pi-Stacking: A:Y.169, A:Y.193, A:Y.261 NM4.7: 12 residues within 4Å: Chain B: Y.169, I.191, T.192, Y.193, L.194, F.195, S.215, H.216, V.218, L.245, F.259, Y.261 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.259, B:Y.261, B:Y.261 pi-Stacking: B:Y.169, B:Y.193, B:Y.261

7 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.222, C.287, C.289, C.294, R.295 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.222, A:C.287, A:C.289, A:C.294 ZN.3: 7 residues within 4Å: Chain A: C.80, C.82, C.85, C.90, C.118 Ligands: ZN.4, ZN.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.80, A:C.82, A:C.85, A:C.90 ZN.4: 7 residues within 4Å: Chain A: C.80, C.90, C.91, C.118, C.122 Ligands: ZN.3, ZN.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.80, A:C.91, A:C.118, A:C.122 ZN.5: 7 residues within 4Å: Chain A: C.80, C.85, C.118, C.124, C.128 Ligands: ZN.3, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.85, A:C.118, A:C.124, A:C.128 ZN.8: 7 residues within 4Å: Chain B: C.80, C.82, C.85, C.90, C.118 Ligands: ZN.9, ZN.10 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.80, B:C.82, B:C.85, B:C.90 ZN.9: 7 residues within 4Å: Chain B: C.80, C.90, C.91, C.118, C.122 Ligands: ZN.8, ZN.10 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.80, B:C.91, B:C.118, B:C.122 ZN.10: 6 residues within 4Å: Chain B: C.85, C.118, C.124, C.128 Ligands: ZN.8, ZN.9 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.85, B:C.118, B:C.124, B:C.128

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.6: 6 residues within 4Å: Chain A: D.196, L.197, D.198, Y.199, N.230, I.243 No protein-ligand interaction detected (PLIP) UNX.11: 1 residues within 4Å: Chain B: C.222 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halabelian, L. et al., Methyltransferase domain of human suppressor of variegation 3-9 homolog 2 (SUV39H2) in complex with OTS186935 inhibitor. to be published

Release Date

2019-05-29

Peptides

Histone-lysine N-methyltransferase SUV39H2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SUV39H2