SMTL ID : 6p1z.2 (1 other biounit)

Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with the C-terminal part of the T4 gp5 beta-helical domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-3-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: E.73 No protein-ligand interaction detected (PLIP)

1 x ELA: 9-OCTADECENOIC ACID(Non-covalent)

ELA.2: 25 residues within 4Å: Chain A: I.17, V.19, V.23, I.25, T.41, V.43, Q.47 Chain B: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Chain C: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Ligands: PLM.3, STE.4 13 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: B:E.7, B:K.9, B:I.25, B:I.33, A:I.17, A:V.23, A:I.25, C:V.11, C:I.33 Water bridges: A:T.41, A:Q.47, C:T.41, C:T.41

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.3: 23 residues within 4Å: Chain A: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39 Chain B: I.17, V.19, V.23, I.25, T.41, V.43 Chain C: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Ligands: ELA.2, STE.4 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:I.17, B:I.25, C:I.25, C:A.31, C:I.33

1 x STE: STEARIC ACID(Non-covalent)

STE.4: 25 residues within 4Å: Chain A: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Chain B: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Chain C: I.17, V.19, V.23, I.25, T.41, V.43, Q.47 Ligands: ELA.2, PLM.3 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:I.25, B:I.33, B:V.35 Water bridges: C:T.41

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain D: G.13, H.41, H.46, C.74, H.76 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.41, D:H.46, D:C.74, D:H.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buth, S.A. et al., Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with the C-terminal part of the T4 gp5 beta-helical domain. To Be Published

Release Date

2020-05-27

Peptides

Baseplate central spike complex protein gp5: ABC
PAAR-repeat central spike tip protein: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Baseplate central spike complex protein gp5

PAAR-repeat central spike tip protein

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