SMTL ID : 6p22.1

Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-3-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.73 Chain B: E.73 Chain C: E.73 No protein-ligand interaction detected (PLIP)

1 x STE: STEARIC ACID(Non-covalent)

STE.2: 25 residues within 4Å: Chain A: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Chain B: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Chain C: I.17, V.19, V.23, I.25, T.41, V.43, Q.47 Ligands: ELA.3, PLM.4 6 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: A:E.7, A:K.9, A:I.25, A:I.33, C:I.17, B:I.33

1 x ELA: 9-OCTADECENOIC ACID(Non-covalent)

ELA.3: 23 residues within 4Å: Chain A: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Chain B: I.17, V.19, V.23, I.25, T.41 Chain C: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Ligands: STE.2, PLM.4 9 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: B:I.17, B:I.25, A:V.11, A:I.33, A:V.35, C:K.9, C:K.9, C:A.31, C:I.33

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.4: 24 residues within 4Å: Chain A: I.17, V.19, V.23, I.25, T.41, V.43 Chain B: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Chain C: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Ligands: STE.2, ELA.3 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:I.17, A:V.23, A:I.25, C:I.33, C:V.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buth, S.A. et al., Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC. To Be Published

Release Date

2020-05-27

Peptides

CHIMERA OF CENTRAL SPIKE PROTEINS GP5 FROM PHAGE T4 AND PVC8 FROM PVC: ABC
PAAR-REPEAT CENTRAL SPIKE TIP PROTEIN: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CHIMERA OF CENTRAL SPIKE PROTEINS GP5 FROM PHAGE T4 AND PVC8 FROM PVC

PAAR-REPEAT CENTRAL SPIKE TIP PROTEIN