SMTL ID : 6p2a.1 (1 other biounit)

Chimera of bacteriophage OBP gp146 central spike protein and a T4 gp5 beta-helix fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 6 residues within 4Å: Chain A: H.131, H.133 Chain B: H.131, H.133 Chain C: H.131, H.133 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C Metal complexes: A:H.131, A:H.133, B:H.131, B:H.133, C:H.131, C:H.133

1 x STE: STEARIC ACID(Non-covalent)

STE.2: 24 residues within 4Å: Chain A: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Chain B: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Chain C: I.17, V.19, V.23, I.25, T.41, V.43 Ligands: ELA.3, PLM.4 6 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: C:I.17, B:I.17, B:I.17, A:E.7, A:I.25, A:I.25

1 x ELA: 9-OCTADECENOIC ACID(Non-covalent)

ELA.3: 24 residues within 4Å: Chain A: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Chain B: I.17, V.19, V.23, I.25, T.41, V.43, Q.47 Chain C: E.7, K.9, I.25, V.27, A.31, I.33 Ligands: STE.2, PLM.4 12 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: B:V.23, B:I.25, A:V.11, A:I.17, A:I.17, A:I.33, A:V.35, C:I.25, C:A.31, C:I.33 Water bridges: B:Q.47, B:Q.47

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.4: 23 residues within 4Å: Chain A: I.17, V.19, V.23, I.25, T.41, V.43, Q.47 Chain B: E.7, K.9, I.25, V.27, A.31, I.33 Chain C: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39 Ligands: STE.2, ELA.3 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: B:I.25, A:I.25, C:I.33, C:V.35

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buth, S.A. et al., Chimera of bacteriophage OBP gp146 central spike protein and a T4 gp5 beta-helix fragment. To Be Published

Release Date

2020-05-27

Peptides

CHIMERA OF BACTERIOPHAGE OBP GP146 AND A T4 GP5: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

CHIMERA OF BACTERIOPHAGE OBP GP146 AND A T4 GP5

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