SMTL ID : 6p2n.1

Crystal structure of Paenibacillus graminis GH74 (PgGH74)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: S.364, T.365, S.366 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.366 Water bridges: A:L.367 GOL.2: 4 residues within 4Å: Chain A: N.273, S.276, A.278, T.280 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.273, A:S.276, A:T.280 Water bridges: A:D.250, A:K.271, A:K.271, A:N.273, A:T.280 GOL.3: 5 residues within 4Å: Chain A: Q.530, I.622, S.623, M.624, K.625 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.622 Water bridges: A:I.474, A:I.474, A:Q.530, A:Q.530, A:Q.530, A:S.623

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 7 residues within 4Å: Chain A: G.124, R.125, S.126, H.241, V.259, G.260, P.261 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: I.24, R.36, L.72 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 3 residues within 4Å: Chain A: I.23, D.379, E.381 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:I.23, A:E.381, H2O.14, H2O.15, H2O.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arnal, G. et al., Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74. J.Biol.Chem. (2019)

Release Date

2019-07-31

Peptides

Xyloglucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Xyloglucanase