SMTL ID : 6p4w.1 (1 other biounit)

XPB helicase in a complex with truncated Bax1 from Sulfurisphaera tokodaii at 2.96 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: G.94, G.96, K.97, T.98, R.128 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.94, A:G.96, A:K.97, A:T.98, A:T.98 Salt bridges: A:R.128

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.97, T.98, D.175 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: H.178, H.179, S.182, R.206 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.182 Water bridges: A:R.206, A:R.206

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: K.252, D.256, G.428 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: E.358, E.361, I.362, Y.371 Chain B: R.87 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: D.156 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: Y.4, D.15 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: V.349, T.354 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: L.230, A.236, K.237, R.413 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain A: K.67 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: R.38, R.41, K.42 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain B: Y.183, I.296, E.311, K.324 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: Y.159, V.231 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, L. et al., XPB helicase in a complex with truncated Bax1 from Sulfurisphaera tokodaii at 2.96 Angstrom resolution. To Be Published

Release Date

2020-06-03

Peptides

DNA-dependent ATPase XPBII: A
Endonuclease Bax1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA-dependent ATPase XPBII

Endonuclease Bax1

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