SMTL ID : 6p5o.1

The structure of rat cytosolic PEPCK in complex with 3-(carboxymethylthiol)-picolinic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: K.244, H.264, K.290, D.311 Ligands: O2Y.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.264, A:D.311, H2O.13 MN.2: 1 residues within 4Å: Chain A: E.63 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.63

1 x O2Y: 3-[(carboxymethyl)sulfanyl]pyridine-2-carboxylic acid(Non-covalent)

O2Y.3: 14 residues within 4Å: Chain A: A.86, R.87, Y.235, G.236, G.237, K.243, K.244, H.264, D.311, F.333, N.403, R.405, F.485 Ligands: MN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.333 Hydrogen bonds: A:R.87, A:G.237, A:N.403, A:N.403 Water bridges: A:R.87, A:R.405, A:R.405, A:R.405 Salt bridges: A:R.87, A:K.244, A:H.264, A:R.405

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: V.65, L.79, N.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.79, A:N.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mcleod, M.J. et al., Characterization of 3-[(Carboxymethyl)thio]picolinic Acid: A Novel Inhibitor of Phosphoenolpyruvate Carboxykinase. Biochemistry (2019)

Release Date

2019-09-18

Peptides

Phosphoenolpyruvate carboxykinase, cytosolic [GTP]: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate carboxykinase, cytosolic [GTP]

Related Entries With Identical Sequence