SMTL ID : 6p60.2 (3 other biounits)

Vaccine-elicited NHP FP-targeting neutralizing antibody A12V163-a.02 in complex with HIV fusion peptide (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV fusion peptide residue 512-519(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 21 residues within 4Å: Chain A: Y.34, S.36, W.48, Y.51, D.100, G.101, V.102, A.103, T.107, G.109, D.110 Chain B: N.32, Y.33, Q.35, Y.37, L.47, Y.50, E.51, Q.90, Y.92, H.99 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.33, B:Y.50, B:Y.92, B:Y.92, B:H.99, A:Y.51 Hydrogen bonds: B:Y.37, B:E.51, A:G.101 Water bridges: B:N.32, B:Y.37, B:H.99, A:D.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., Vaccine-elicited NHP FP-targeting neutralizing antibody A12V163-a.02 in complex with HIV fusion peptide (residue 512-519). To Be Published

Release Date

2020-06-03

Peptides

Antibody A12V163-a.02 heavy chain: A
Antibody A12V163-a.02 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Antibody A12V163-a.02 heavy chain

Antibody A12V163-a.02 light chain

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