SMTL ID : 6p6z.1

HCV NS3/4A protease domain of genotype 4a with an extended linker in complex with glecaprevir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.118, T.119, C.120, C.166, M.168, H.170 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.118, A:C.120, A:C.166, H2O.1

1 x O31: (3aR,7S,10S,12R,21E,24aR)-7-tert-butyl-N-[(1R,2R)-2-(difluoromethyl)-1-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}cyclop ropyl]-20,20-difluoro-5,8-dioxo-2,3,3a,5,6,7,8,11,12,20,23,24a-dodecahydro-1H,10H-9,12-methanocyclopenta[18,19][1,10,17, 3,6]trioxadiazacyclononadecino[11,12-b]quinoxaline-10-carboxamide(Non-covalent)

O31.2: 23 residues within 4Å: Chain A: Q.62, S.63, F.64, V.76, Y.77, H.78, G.79, V.99, D.102, R.144, I.153, L.156, K.157, G.158, S.159, S.160, F.175, R.176, A.177, A.178, V.179, C.180, D.189 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Q.62, A:F.64, A:Y.77, A:H.78, A:V.99, A:D.102, A:I.153, A:F.175, A:A.177, A:D.189 Hydrogen bonds: A:H.78, A:G.158, A:S.159, A:S.160, A:S.160, A:R.176, A:A.178, A:A.178 pi-Cation interactions: A:H.78 Halogen bonds: A:R.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timm, J. et al., Molecular mechanism of pan-genotypic HCV NS3/4A protease inhibition by glecaprevir and characterization of genotype-specific structural differences. To Be Published

Release Date

2020-06-10

Peptides

Non-structural protein 4A,Serine protease NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 4A,Serine protease NS3