SMTL ID : 6p7g.1 (1 other biounit)

The co-crystal structure of BRAF(V600E) with PHI1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x E7M: 3-[(imidazo[1,2-b]pyridazin-3-yl)ethynyl]-4-methyl-N-[4-({[2-(morpholin-4-yl)ethyl]amino}methyl)-3-(trifluoromethyl)phenyl]benzamide(Non-covalent)

E7M.1: 22 residues within 4Å: Chain A: V.45, A.55, V.56, K.57, N.74, E.75, V.78, L.79, I.87, L.88, I.101, T.103, Q.104, W.105, C.106, L.141, I.147, H.148, G.167, D.168, F.169, L.171 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.57, A:E.75, A:L.79, A:L.88, A:T.103, A:W.105, A:D.168, A:F.169 Hydrogen bonds: A:E.75, A:C.106, A:I.147, A:D.168 E7M.2: 22 residues within 4Å: Chain B: V.45, A.55, V.56, K.57, N.74, E.75, V.78, L.79, I.87, L.88, I.101, T.103, Q.104, W.105, C.106, I.147, H.148, R.149, F.157, G.167, D.168, F.169 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:A.55, B:K.57, B:E.75, B:L.79, B:L.88, B:I.101, B:T.103, B:W.105, B:F.157, B:D.168, B:F.169 Hydrogen bonds: B:E.75, B:C.106, B:H.148, B:D.168

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.3: 3 residues within 4Å: Chain B: Q.183, Q.186, I.191 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Q.183, B:Q.183 Hydrogen bonds: B:Q.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cotto-Rios, X.M. et al., Inhibitors of BRAF dimers using an allosteric site. Nat Commun (2020)

Release Date

2020-09-23

Peptides

Serine/threonine-protein kinase B-raf: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase B-raf

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