SMTL ID : 6p7y.1 (1 other biounit)

Crystal Structure of the Cedar henipavirus Attachment G Glycoprotein globular domain in complex with the receptor ephrin-B2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: C.118, N.119, F.123, G.186, E.187, F.189, Q.247, N.248, M.250 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.248, A:Q.247

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 6 residues within 4Å: Chain A: Q.109, I.128, N.130, S.142, D.143, E.144 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.109, A:N.130

1 x NAG- NAG- BMA- MAN- MAN- FUC- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC-FUC.3: 1 residues within 4Å: Chain A: N.211 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.4: 7 residues within 4Å: Chain A: D.136, N.137, I.173, N.198, N.233, S.235, R.236 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.5: 4 residues within 4Å: Chain A: N.307, W.308, M.309, N.310 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.6: 7 residues within 4Å: Chain A: S.22, V.23, N.370, S.371, T.372, T.373, L.375 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.249 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laing, E.D. et al., Structural and functional analyses reveal promiscuous and species specific use of ephrin receptors by Cedar virus. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-09-25

Peptides

Attachment glycoprotein: A
Ephrin-B2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Attachment glycoprotein

Ephrin-B2

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