SMTL ID : 6p8d.2 (1 other biounit)

Vaccine-elicited murine FP-targeting antibody vFP6.01 in complex with HIV fusion peptide (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV fusion peptide residue 512-519(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 15 residues within 4Å: Chain A: R.31, Y.32, W.33, N.35, Y.50, D.52, Y.100, V.101, A.102 Chain B: Y.31, Y.37, L.55, L.96, V.97, F.101 20 PLIP interactions: 13 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:W.33, A:W.33, A:Y.100, A:Y.100, A:V.101, A:A.102, B:Y.31, B:Y.37, B:L.96, B:F.101, B:F.101 Hydrogen bonds: A:R.31, A:D.52, A:Y.100, A:A.102, B:L.96 Water bridges: A:W.33, B:N.39 pi-Stacking: A:W.33, A:Y.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., Modular recognition of antigens provides a mechanism that improves vaccine-elicited antibody-class frequencies. To Be Published

Release Date

2020-06-10

Peptides

Antibody VFP6.01 heavy chain: A
Antibody VFP6.01 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Antibody VFP6.01 heavy chain

Antibody VFP6.01 light chain

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