SMTL ID : 6p8n.1 (1 other biounit)

Crystal Structure of Antibody P-p1f1 in Complex with eOD-GT8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 11 residues within 4Å: Chain A: H.14, C.15, S.16, S.17, N.18, T.56, V.57, N.65, N.150, C.151, G.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.16, A:T.56, A:N.65

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.2: 5 residues within 4Å: Chain A: D.44 Chain B: G.31, Y.33, N.52, N.54 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.31, B:N.52, B:N.54

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain B: N.212, T.213, K.214 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.214 EDO.4: 2 residues within 4Å: Chain C: T.111, V.112 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:V.112 EDO.5: 3 residues within 4Å: Chain C: T.208, K.209, S.210 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, K.R. et al., Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization. Cell Rep (2019)

Release Date

2019-11-20

Peptides

Env outer domain eOD-GT8: A
P-p1f1 Heavy Chain: B
P-p1f1 Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

Env outer domain eOD-GT8

P-p1f1 Heavy Chain

P-p1f1 Light Chain

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