SMTL ID : 6p9a.1

HIV-1 Protease multiple mutant PRS5B with Darunavir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: T.73, T.74, N.88, Q.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.74, A:T.74, A:N.88 PO4.2: 2 residues within 4Å: Chain A: V.71, Q.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.92 Water bridges: A:T.72, A:T.72, A:T.72 PO4.3: 5 residues within 4Å: Chain A: D.29, L.46, I.47, G.48 Ligands: 017.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.29, A:G.48 Water bridges: A:D.30 PO4.5: 4 residues within 4Å: Chain B: D.29, D.30, K.45, I.47 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.8 Water bridges: B:K.45, B:K.45 Salt bridges: B:K.45

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.4: 24 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, V.82 Ligands: PO4.3 22 PLIP interactions: 11 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:P.81, A:V.82, B:L.23, B:V.82 Hydrogen bonds: A:D.29, A:D.30, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:R.8, A:D.30, B:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kneller, D.W. et al., Highly drug-resistant HIV-1 protease reveals decreased intra-subunit interactions due to clusters of mutations. Febs J. (2020)

Release Date

2020-04-15

Peptides

HIV-1 Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

HIV-1 Protease

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