- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 9 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.3: 8 residues within 4Å:- Chain A: R.91, D.114, N.115, L.116, R.132, C.133, I.134
- Chain C: L.75
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.132
- Water bridges: A:R.91
DMS.4: 6 residues within 4Å:- Chain A: K.55, G.57, E.85, I.86, G.87, K.110
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:E.85
DMS.5: 4 residues within 4Å:- Chain A: D.148, D.149, A.167, R.255
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.255
- Salt bridges: A:D.148, A:D.149
DMS.9: 8 residues within 4Å:- Chain A: L.75
- Chain B: R.91, D.114, N.115, L.116, R.132, C.133, I.134
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.132
- Water bridges: B:R.91
DMS.10: 6 residues within 4Å:- Chain B: K.55, G.57, E.85, I.86, G.87, K.110
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:E.85
DMS.11: 4 residues within 4Å:- Chain B: D.148, D.149, A.167, R.255
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.255
- Salt bridges: B:D.148, B:D.149
DMS.15: 8 residues within 4Å:- Chain B: L.75
- Chain C: R.91, D.114, N.115, L.116, R.132, C.133, I.134
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.132
- Water bridges: C:R.91
DMS.16: 6 residues within 4Å:- Chain C: K.55, G.57, E.85, I.86, G.87, K.110
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:E.85
DMS.17: 4 residues within 4Å:- Chain C: D.148, D.149, A.167, R.255
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.255
- Salt bridges: C:D.148, C:D.149
- 3 x O5J: 3-[2-(4-methoxyphenyl)-2-oxoethyl]-5,5-diphenylimidazolidine-2,4-dione(Non-covalent)
O5J.6: 23 residues within 4Å:- Chain A: Q.73, L.75, H.122, T.140, A.142, A.158, V.159, H.160, Q.161, G.176, V.177, A.178, N.190, H.191
- Chain B: M.118, I.134, A.136, N.137, I.152, G.154, G.155, G.173, C.174
10 PLIP interactions:5 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:I.134, B:A.136, B:N.137, B:I.152, A:T.140, A:A.158
- Hydrogen bonds: B:G.155, A:Q.161
- Water bridges: A:A.142, A:Q.161
O5J.12: 23 residues within 4Å:- Chain B: Q.73, L.75, H.122, T.140, A.142, A.158, V.159, H.160, Q.161, G.176, V.177, A.178, N.190, H.191
- Chain C: M.118, I.134, A.136, N.137, I.152, G.154, G.155, G.173, C.174
10 PLIP interactions:5 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: C:I.134, C:A.136, C:N.137, C:I.152, B:T.140, B:A.158
- Hydrogen bonds: C:G.155, B:Q.161
- Water bridges: B:A.142, B:Q.161
O5J.18: 23 residues within 4Å:- Chain A: M.118, I.134, A.136, N.137, I.152, G.154, G.155, G.173, C.174
- Chain C: Q.73, L.75, H.122, T.140, A.142, A.158, V.159, H.160, Q.161, G.176, V.177, A.178, N.190, H.191
10 PLIP interactions:5 interactions with chain A, 5 interactions with chain C- Hydrophobic interactions: A:I.134, A:A.136, A:N.137, A:I.152, C:T.140, C:A.158
- Hydrogen bonds: A:G.155, C:Q.161
- Water bridges: C:A.142, C:Q.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Han, W. et al., Two Distinct Mechanisms of Inhibition of LpxA Acyltransferase Essential for Lipopolysaccharide Biosynthesis. J.Am.Chem.Soc. (2020)
- Release Date
- 2020-03-11
- Peptides
- Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 9 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 3 x O5J: 3-[2-(4-methoxyphenyl)-2-oxoethyl]-5,5-diphenylimidazolidine-2,4-dione(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Han, W. et al., Two Distinct Mechanisms of Inhibition of LpxA Acyltransferase Essential for Lipopolysaccharide Biosynthesis. J.Am.Chem.Soc. (2020)
- Release Date
- 2020-03-11
- Peptides
- Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A