- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ASP: ASPARTIC ACID(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.2: 5 residues within 4Å:- Chain A: K.221, Y.244
- Chain B: S.232, D.233, L.234
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:L.234
- Hydrogen bonds: B:D.233, B:D.233, A:K.221, A:K.221
- Water bridges: A:Y.244, A:Y.244
- Salt bridges: A:K.221
CIT.6: 5 residues within 4Å:- Chain C: K.221, Y.244
- Chain D: S.232, D.233, L.234
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain D- Hydrogen bonds: C:K.221, C:K.221, C:Y.244, D:D.233, D:D.233, D:D.233
- Salt bridges: C:K.221
- Hydrophobic interactions: D:L.234
- 2 x IMD: IMIDAZOLE(Non-covalent)
IMD.3: 7 residues within 4Å:- Chain A: N.11, I.12, T.13, N.55, K.57, K.87, T.88
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.13, A:N.55
IMD.7: 7 residues within 4Å:- Chain C: N.11, I.12, T.13, N.55, K.57, K.87, T.88
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.55, C:T.88
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lubkowski, J. et al., Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase. Protein Sci. (2019)
- Release Date
- 2019-09-04
- Peptides
- L-asparaginase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ASP: ASPARTIC ACID(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- 2 x IMD: IMIDAZOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lubkowski, J. et al., Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase. Protein Sci. (2019)
- Release Date
- 2019-09-04
- Peptides
- L-asparaginase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B