SMTL ID : 6pbr.1

Catalytic domain of E.coli dihydrolipoamide succinyltransferase in I4 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-24-mer

Ligands

24 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: M.184, M.195, K.220, E.224 Chain B: K.180 Ligand excluded by PLIP NA.2: 4 residues within 4Å: Chain B: M.184, K.220, E.224 Chain C: K.180 Ligand excluded by PLIP NA.3: 2 residues within 4Å: Chain A: K.180 Chain C: E.224 Ligand excluded by PLIP NA.4: 1 residues within 4Å: Chain D: E.224 Ligand excluded by PLIP NA.5: 2 residues within 4Å: Chain E: E.224 Chain F: K.180 Ligand excluded by PLIP NA.6: 3 residues within 4Å: Chain D: K.180 Chain F: K.220, E.224 Ligand excluded by PLIP NA.7: 5 residues within 4Å: Chain G: M.184, M.195, K.220, E.224 Chain H: K.180 Ligand excluded by PLIP NA.8: 4 residues within 4Å: Chain H: M.184, K.220, E.224 Chain I: K.180 Ligand excluded by PLIP NA.9: 2 residues within 4Å: Chain G: K.180 Chain I: E.224 Ligand excluded by PLIP NA.10: 1 residues within 4Å: Chain J: E.224 Ligand excluded by PLIP NA.11: 2 residues within 4Å: Chain K: E.224 Chain L: K.180 Ligand excluded by PLIP NA.12: 3 residues within 4Å: Chain J: K.180 Chain L: K.220, E.224 Ligand excluded by PLIP NA.13: 5 residues within 4Å: Chain M: M.184, M.195, K.220, E.224 Chain N: K.180 Ligand excluded by PLIP NA.14: 4 residues within 4Å: Chain N: M.184, K.220, E.224 Chain O: K.180 Ligand excluded by PLIP NA.15: 2 residues within 4Å: Chain M: K.180 Chain O: E.224 Ligand excluded by PLIP NA.16: 1 residues within 4Å: Chain P: E.224 Ligand excluded by PLIP NA.17: 2 residues within 4Å: Chain Q: E.224 Chain R: K.180 Ligand excluded by PLIP NA.18: 3 residues within 4Å: Chain P: K.180 Chain R: K.220, E.224 Ligand excluded by PLIP NA.19: 5 residues within 4Å: Chain S: M.184, M.195, K.220, E.224 Chain T: K.180 Ligand excluded by PLIP NA.20: 4 residues within 4Å: Chain T: M.184, K.220, E.224 Chain U: K.180 Ligand excluded by PLIP NA.21: 2 residues within 4Å: Chain S: K.180 Chain U: E.224 Ligand excluded by PLIP NA.22: 1 residues within 4Å: Chain V: E.224 Ligand excluded by PLIP NA.23: 2 residues within 4Å: Chain W: E.224 Chain X: K.180 Ligand excluded by PLIP NA.24: 3 residues within 4Å: Chain V: K.180 Chain X: K.220, E.224 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andi, B. et al., Structure of the dihydrolipoamide succinyltransferase catalytic domain from Escherichia coli in a novel crystal form: a tale of a common protein crystallization contaminant. Acta Crystallogr.,Sect.F (2019)

Release Date

2019-06-26

Peptides

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

M
A

N
B

O
C

P
D

Q
E

R
F

S
A

T
B

U
C

V
D

W
E

X
F

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

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