SMTL ID : 6pde.1

Crystal structure of MYST acetyltransferase domain in complex with inhibitor 40

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.34, C.37, H.50, C.54 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.34, A:C.37, A:H.50, A:C.54

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: I.13, D.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.14 Water bridges: A:E.12, A:D.14

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: R.149, L.183, S.184, S.187 Ligands: O9V.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.149, A:S.187, A:S.187 GOL.4: 3 residues within 4Å: Chain A: Q.225, V.230, H.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.225, A:H.237

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: Y.11, P.146, R.150 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.150

1 x O9V: 2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-propoxybenzohydrazide(Non-covalent)

O9V.6: 19 residues within 4Å: Chain A: F.94, L.95, I.141, M.142, I.143, Q.148, R.149, R.150, G.151, Y.152, G.153, R.154, I.157, S.178, L.180, S.184, S.187, Y.188 Ligands: GOL.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.94, A:L.95, A:I.141, A:I.143, A:Q.148, A:R.154, A:I.157, A:L.180 Hydrogen bonds: A:I.143, A:R.149, A:G.151, A:G.153, A:R.154, A:S.184, A:S.184 Water bridges: A:R.150, A:R.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priebbenow, D.L. et al., Discovery of Acylsulfonohydrazide-Derived Inhibitors of the Lysine Acetyltransferase, KAT6A, as Potent Senescence-Inducing Anti-Cancer Agents. J.Med.Chem. (2020)

Release Date

2020-04-01

Peptides

Histone acetyltransferase KAT8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase KAT8

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