SMTL ID : 6pdj.1

Tyrosine-protein kinase LCK bound to Compound 11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x ODJ: N-{4-[(6-methoxypyrazolo[1,5-a]pyridine-3-carbonyl)amino]-3-methylphenyl}-1-methyl-1H-indazole-3-carboxamide(Non-covalent)

ODJ.1: 18 residues within 4Å: Chain A: L.30, V.38, A.50, K.52, M.59, F.64, N.69, I.93, T.95, E.96, Y.97, M.98, E.99, G.101, L.150, D.161, F.162, G.163 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.30, A:V.38, A:I.93, A:I.93, A:T.95, A:L.150, A:F.162 Hydrogen bonds: A:T.95, A:M.98, A:D.161

1 x CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID(Non-covalent)

CXS.2: 2 residues within 4Å: Chain A: Y.43, Y.83 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.43, A:Y.43, A:Y.43, A:Y.83, A:Y.83 Water bridges: A:R.81

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: G.235, Y.236, R.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.237 Water bridges: A:Y.249, A:R.253 SO4.4: 3 residues within 4Å: Chain A: T.109, P.110, S.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.109, A:S.111, A:S.111 Water bridges: A:S.111

1 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 3 residues within 4Å: Chain A: G.1, H.2, M.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.2, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Malley, D.P. et al., Discovery of Pyridazinone and Pyrazolo[1,5-a]pyridine Inhibitors of C-Terminal Src Kinase. Acs Med.Chem.Lett. (2019)

Release Date

2019-10-09

Peptides

Tyrosine-protein kinase Lck: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase Lck