SMTL ID : 6pdl.4 (3 other biounits)

Crystal Structure of Hendra Virus Attachment G Glycoprotein in Complex with Receptor Ephrin-B2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: T.191, Y.193, K.245, N.247, S.249, L.250 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: Q.308, W.309, R.310, N.311 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- FUC- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC-FUC.3: 5 residues within 4Å: Chain A: R.325, F.326, N.327, N.359 Chain B: K.38 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:N.327 Hydrogen bonds: B:K.38

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: V.130, N.136, S.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.136, A:S.139 NAG.5: 2 residues within 4Å: Chain A: N.208, S.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.210 NAG.6: 5 residues within 4Å: Chain B: N.113, S.115, E.117, G.118, N.121 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.115, B:S.115, B:N.121 NAG.7: 5 residues within 4Å: Chain B: Y.8, N.10, S.12, N.13, P.37 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.13 Water bridges: B:N.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., New insights into the Hendra virus attachment and entry process from structures of the virus G glycoprotein and its complex with Ephrin-B2. PLoS ONE (2012)

Release Date

2019-11-27

Peptides

Attachment glycoprotein: A
Ephrin-B2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Attachment glycoprotein

Ephrin-B2

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