SMTL ID : 6pdr.1

Vaccine-elicited murine FP-targeting antibody vFP25.18 in complex with HIV fusion peptide (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV fusion peptide residue 512-519(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 21 residues within 4Å: Chain A: H.31, Y.37, Y.41, L.51, F.94, G.96, V.99, L.101, F.103 Chain B: N.33, S.35, W.47, V.50, A.97, S.99, S.100, R.101, L.102, F.103, G.104, W.106 21 PLIP interactions: 13 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:W.47, B:V.50, B:A.97, B:W.106, A:Y.37, A:Y.41, A:L.51, A:V.99, A:L.101, A:F.103 Hydrogen bonds: B:N.33, B:S.35, B:S.99, B:S.99, B:S.100, B:S.100, B:R.101 Water bridges: B:N.52, B:W.106, A:Y.41, A:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., Modular recognition of antigens provides a mechanism that improves vaccine-elicited antibody-class frequencies. To Be Published

Release Date

2020-06-24

Peptides

antibody vFP25.18 light chain: A
antibody vFP25.18 heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

antibody vFP25.18 light chain

antibody vFP25.18 heavy chain