SMTL ID : 6pdu.1

Vaccine-elicited NHP FP-targeting antibody 13N024-a.01 in complex with HIV fusion peptide (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV-1 fusion peptide residue 512-519(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 19 residues within 4Å: Chain A: H.31, W.32, Y.37, S.39, Y.54, Q.55, Y.60, G.96, V.99, P.101 Chain B: T.31, S.32, D.33, H.35, A.57, Y.59, D.98, F.99, D.100 18 PLIP interactions: 7 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:F.99, B:F.99, A:W.32, A:W.32, A:Y.54, A:Y.60, A:V.99, A:P.101 Hydrogen bonds: B:S.32, B:D.33, B:D.100, B:D.100, A:S.39, A:Q.55, A:Y.60, A:G.96 Water bridges: B:D.33, A:Y.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., Modular recognition of antigens provides a mechanism that improves vaccine-elicited antibody-class frequencies. To Be Published

Release Date

2020-06-24

Peptides

antibody 13N024-a.01, light chain: A
antibody 13N024-a.01, heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

antibody 13N024-a.01, light chain

antibody 13N024-a.01, heavy chain