SMTL ID : 6pe9.4 (4 other biounits)

Crystal Structure of CD40 complexed to FAB516

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.13 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.109, T.110, T.111, K.204 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.109, A:T.111, A:T.111 Salt bridges: A:K.204 SO4.2: 8 residues within 4Å: Chain A: L.144, V.172, S.180, L.181, S.182 Chain B: Q.166, S.182, T.184 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.182, A:S.182, B:S.182, B:T.184 SO4.3: 4 residues within 4Å: Chain B: Q.43, K.45, Q.48, K.51 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.48 Water bridges: B:Q.43, B:Q.43 Salt bridges: B:K.45, B:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Argiriadi, M.A. et al., CD40/anti-CD40 antibody complexes which illustrate agonist and antagonist structural switches. BMC Mol Cell Biol (2019)

Release Date

2019-08-14

Peptides

FAB Heavy chain: A
FAB Light chain: B
Tumor necrosis factor receptor superfamily member 5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
V

FAB Heavy chain

FAB Light chain

Tumor necrosis factor receptor superfamily member 5

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