SMTL ID : 6pec.1

Vaccine-elicited NHP FP-targeting antibody DF2F-e.01 in complex with HIV fusion peptide (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV-1 fusion peptide residue 512-519(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 19 residues within 4Å: Chain A: Y.29, Y.46, Y.88, E.89, T.90, Y.91, I.93 Chain B: Y.31, Y.32, Y.33, Y.52, R.55, E.99, S.101, T.103, W.104, K.105, G.106, L.108 20 PLIP interactions: 10 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:Y.31, B:Y.31, B:Y.33, B:Y.52, B:E.99, B:L.108, B:L.108, A:Y.29, A:Y.46, A:Y.88, A:Y.88, A:Y.91, A:Y.91, A:I.93 Hydrogen bonds: B:Y.52, B:R.55, B:R.55, A:Y.88, A:Y.91 Water bridges: A:Y.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., Modular recognition of antigens provides a mechanism that improves vaccine-elicited antibody-class frequencies. To Be Published

Release Date

2020-06-24

Peptides

antibody light chain: A
antibody heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

antibody light chain

antibody heavy chain