SMTL ID : 6ped.1

Crystal structure of HEMK2-TRMT112 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: Y.42, T.48, E.70, G.72, S.73, G.74, V.78, D.96, I.97, N.98, T.121, D.122, L.123, N.141, P.143, A.159, A.160, R.173 Ligands: UNX.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.42 Hydrogen bonds: A:G.72, A:G.72, A:G.74, A:I.97, A:D.122, A:D.122, A:L.123, A:N.141, A:R.173

12 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 5 residues within 4Å: Chain A: D.47, N.141, P.142, Y.144 Ligands: SAH.1 No protein-ligand interaction detected (PLIP) UNX.3: 7 residues within 4Å: Chain A: G.126, L.127, L.128, P.129, R.130 Chain B: L.26, S.28 No protein-ligand interaction detected (PLIP) UNX.4: 5 residues within 4Å: Chain A: A.63, G.64, V.65, I.86, Q.89 No protein-ligand interaction detected (PLIP) UNX.5: 5 residues within 4Å: Chain A: Q.117 Chain B: G.18, M.19, K.20, T.23 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: Y.92, V.114, H.115 Ligands: UNX.7 No protein-ligand interaction detected (PLIP) UNX.7: 6 residues within 4Å: Chain A: P.88, A.90, Y.92, H.115 Ligands: UNX.6, UNX.8 No protein-ligand interaction detected (PLIP) UNX.8: 6 residues within 4Å: Chain A: L.91, Y.92, H.115, I.116, Q.117 Ligands: UNX.7 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain B: P.65, V.67 No protein-ligand interaction detected (PLIP) UNX.10: 5 residues within 4Å: Chain B: H.24, L.27, F.39, P.40, L.41 No protein-ligand interaction detected (PLIP) UNX.11: 7 residues within 4Å: Chain B: K.20, L.21, L.105, L.106, L.107, E.108, V.109 No protein-ligand interaction detected (PLIP) UNX.12: 4 residues within 4Å: Chain B: P.88, V.89, Y.92, F.98 No protein-ligand interaction detected (PLIP) UNX.13: 5 residues within 4Å: Chain B: R.42, Q.44, T.115, L.116, Q.117 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Crystal structure of HEMK2-TRMT112 complex. To Be Published

Release Date

2019-07-03

Peptides

Methyltransferase N6AMT1: A
Multifunctional methyltransferase subunit TRM112-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methyltransferase N6AMT1

Multifunctional methyltransferase subunit TRM112-like protein