SMTL ID : 6pee.1

InvG secretin domain beta-barrel from Salmonella SPI-1 injectisome NC-base

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-15-mer

Ligands

45 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.1: 3 residues within 4Å: Chain A: F.486 Ligands: LDA.2, LDA.43 Ligand excluded by PLIP LDA.2: 2 residues within 4Å: Chain A: F.486 Ligands: LDA.1 Ligand excluded by PLIP LDA.3: 4 residues within 4Å: Chain A: L.321, V.356, S.495 Ligands: LDA.4 Ligand excluded by PLIP LDA.4: 3 residues within 4Å: Chain B: F.486 Ligands: LDA.3, LDA.5 Ligand excluded by PLIP LDA.5: 2 residues within 4Å: Chain B: F.486 Ligands: LDA.4 Ligand excluded by PLIP LDA.6: 4 residues within 4Å: Chain B: L.321, V.356, S.495 Ligands: LDA.7 Ligand excluded by PLIP LDA.7: 3 residues within 4Å: Chain C: F.486 Ligands: LDA.6, LDA.8 Ligand excluded by PLIP LDA.8: 2 residues within 4Å: Chain C: F.486 Ligands: LDA.7 Ligand excluded by PLIP LDA.9: 4 residues within 4Å: Chain C: L.321, V.356, S.495 Ligands: LDA.10 Ligand excluded by PLIP LDA.10: 3 residues within 4Å: Chain D: F.486 Ligands: LDA.9, LDA.11 Ligand excluded by PLIP LDA.11: 2 residues within 4Å: Chain D: F.486 Ligands: LDA.10 Ligand excluded by PLIP LDA.12: 4 residues within 4Å: Chain D: L.321, V.356, S.495 Ligands: LDA.13 Ligand excluded by PLIP LDA.13: 3 residues within 4Å: Chain E: F.486 Ligands: LDA.12, LDA.14 Ligand excluded by PLIP LDA.14: 2 residues within 4Å: Chain E: F.486 Ligands: LDA.13 Ligand excluded by PLIP LDA.15: 4 residues within 4Å: Chain E: L.321, V.356, S.495 Ligands: LDA.16 Ligand excluded by PLIP LDA.16: 3 residues within 4Å: Chain F: F.486 Ligands: LDA.15, LDA.17 Ligand excluded by PLIP LDA.17: 2 residues within 4Å: Chain F: F.486 Ligands: LDA.16 Ligand excluded by PLIP LDA.18: 4 residues within 4Å: Chain F: L.321, V.356, S.495 Ligands: LDA.19 Ligand excluded by PLIP LDA.19: 3 residues within 4Å: Chain G: F.486 Ligands: LDA.18, LDA.20 Ligand excluded by PLIP LDA.20: 2 residues within 4Å: Chain G: F.486 Ligands: LDA.19 Ligand excluded by PLIP LDA.21: 4 residues within 4Å: Chain G: L.321, V.356, S.495 Ligands: LDA.22 Ligand excluded by PLIP LDA.22: 3 residues within 4Å: Chain H: F.486 Ligands: LDA.21, LDA.23 Ligand excluded by PLIP LDA.23: 2 residues within 4Å: Chain H: F.486 Ligands: LDA.22 Ligand excluded by PLIP LDA.24: 4 residues within 4Å: Chain H: L.321, V.356, S.495 Ligands: LDA.25 Ligand excluded by PLIP LDA.25: 5 residues within 4Å: Chain H: L.321, A.358 Chain I: F.486 Ligands: LDA.24, LDA.26 Ligand excluded by PLIP LDA.26: 2 residues within 4Å: Chain I: F.486 Ligands: LDA.25 Ligand excluded by PLIP LDA.27: 4 residues within 4Å: Chain I: L.321, V.356, S.495 Ligands: LDA.28 Ligand excluded by PLIP LDA.28: 3 residues within 4Å: Chain J: F.486 Ligands: LDA.27, LDA.29 Ligand excluded by PLIP LDA.29: 2 residues within 4Å: Chain J: F.486 Ligands: LDA.28 Ligand excluded by PLIP LDA.30: 4 residues within 4Å: Chain J: L.321, V.356, S.495 Ligands: LDA.31 Ligand excluded by PLIP LDA.31: 3 residues within 4Å: Chain K: F.486 Ligands: LDA.30, LDA.32 Ligand excluded by PLIP LDA.32: 2 residues within 4Å: Chain K: F.486 Ligands: LDA.31 Ligand excluded by PLIP LDA.33: 4 residues within 4Å: Chain K: L.321, V.356, S.495 Ligands: LDA.34 Ligand excluded by PLIP LDA.34: 3 residues within 4Å: Chain L: F.486 Ligands: LDA.33, LDA.35 Ligand excluded by PLIP LDA.35: 2 residues within 4Å: Chain L: F.486 Ligands: LDA.34 Ligand excluded by PLIP LDA.36: 4 residues within 4Å: Chain L: L.321, V.356, S.495 Ligands: LDA.37 Ligand excluded by PLIP LDA.37: 3 residues within 4Å: Chain M: F.486 Ligands: LDA.36, LDA.38 Ligand excluded by PLIP LDA.38: 2 residues within 4Å: Chain M: F.486 Ligands: LDA.37 Ligand excluded by PLIP LDA.39: 4 residues within 4Å: Chain M: L.321, V.356, S.495 Ligands: LDA.40 Ligand excluded by PLIP LDA.40: 3 residues within 4Å: Chain N: F.486 Ligands: LDA.39, LDA.41 Ligand excluded by PLIP LDA.41: 2 residues within 4Å: Chain N: F.486 Ligands: LDA.40 Ligand excluded by PLIP LDA.42: 4 residues within 4Å: Chain N: L.321, V.356, S.495 Ligands: LDA.44 Ligand excluded by PLIP LDA.43: 4 residues within 4Å: Chain O: L.321, V.356, S.495 Ligands: LDA.1 Ligand excluded by PLIP LDA.44: 3 residues within 4Å: Chain O: F.486 Ligands: LDA.42, LDA.45 Ligand excluded by PLIP LDA.45: 2 residues within 4Å: Chain O: F.486 Ligands: LDA.44 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, J. et al., T3S injectisome needle complex structures in four distinct states reveal the basis of membrane coupling and assembly. Nat Microbiol (2019)

Release Date

2019-10-23

Peptides

Protein InvG: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
F

F
G

G
H

H
I

I
J

J
K

K
L

L
M

M
N

N
O

O
P

Protein InvG

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