SMTL ID : 6pej.1

Structure of sorbitol dehydrogenase from Sinorhizobium meliloti 1021 bound to sorbitol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x SOR: sorbitol(Non-covalent)

SOR.1: 12 residues within 4Å: Chain A: F.125, Q.175, A.176, R.179, E.181, Y.187, G.218, V.219, H.224, W.225, F.232, V.247 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.175, A:R.179, A:R.179, A:E.181, A:Y.187, A:G.218 Water bridges: A:Q.175 SOR.2: 12 residues within 4Å: Chain B: F.125, S.174, Q.175, R.179, E.181, Y.187, G.218, V.219, H.224, W.225, F.232, V.247 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.175, B:R.179, B:R.179, B:Y.187, B:Y.187, B:G.218 Water bridges: B:Q.175 SOR.3: 12 residues within 4Å: Chain C: F.125, S.174, Q.175, R.179, E.181, Y.187, G.218, V.219, H.224, W.225, F.232, V.247 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Q.175, C:R.179, C:E.181, C:Y.187, C:G.218 Water bridges: C:V.220, C:K.243, C:K.243 SOR.4: 13 residues within 4Å: Chain D: F.125, S.174, Q.175, R.179, E.181, V.184, Y.187, G.218, V.219, H.224, W.225, F.232, V.247 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.174, D:Q.175, D:R.179, D:R.179, D:E.181, D:Y.187, D:Y.187, D:G.218 Water bridges: D:Q.175, D:V.220, D:K.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kohlmeier, M.G. et al., Characterization of the sorbitol dehydrogenase SmoS from Sinorhizobium meliloti 1021. Acta Crystallogr.,Sect.D (2021)

Release Date

2020-06-24

Peptides

Sorbitol dehydrogenase (L-iditol 2-dehydrogenase): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Sorbitol dehydrogenase (L-iditol 2-dehydrogenase)

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