SMTL ID : 6pgc.1

WDR5delta32 bound to methyl benzyl(4-(4-(hydroxymethyl)-1H-imidazol-2-yl)butyl)carbamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.192, N.236, A.279, C.280 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.236, A:C.280 Water bridges: A:K.192, A:K.192, A:K.192, A:F.237 Salt bridges: A:K.192 SO4.2: 2 residues within 4Å: Chain A: R.152, N.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.196 Salt bridges: A:R.152

1 x OJJ: methyl benzyl{4-[4-(hydroxymethyl)-1H-imidazol-2-yl]butyl}carbamate(Non-covalent)

OJJ.3: 15 residues within 4Å: Chain A: A.18, S.20, S.62, F.104, C.105, S.146, A.147, Y.162, F.190, K.230, Y.231, C.232, F.234, I.276, E.293 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.18, A:F.104, A:Y.231 Hydrogen bonds: A:S.62, A:C.232 pi-Stacking: A:F.104, A:F.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dennis, M.L. et al., Fragment screening for a protein-protein interaction inhibitor to WDR5. Struct Dyn. (2019)

Release Date

2019-12-11

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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