SMTL ID : 6pgr.1

Cocomplex structure of Deoxyhypusine synthase with inhibitor 6-BROMO-N-(1H-INDOL-4-YL)-1-BENZOTHIOPHENE-2-CARBOXAMIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x 8XY: 6-bromo-N-(1H-indol-4-yl)-1-benzothiophene-2-carboxamide(Non-covalent)

8XY.1: 18 residues within 4Å: Chain A: F.103, G.105, Y.106, T.107, V.132, L.266, I.269, N.270, I.283, L.284, G.286, G.287, V.288, V.289, H.291, K.332 Chain B: T.240, D.241 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.103, A:V.132, A:I.269, A:I.269, A:I.283, A:V.289 Hydrogen bonds: A:N.270, A:K.332 Water bridges: A:N.270 pi-Stacking: A:H.291, A:H.291 Halogen bonds: A:L.284 8XY.2: 18 residues within 4Å: Chain A: T.240, D.241 Chain B: F.103, G.105, Y.106, T.107, V.132, T.134, I.269, N.270, I.283, L.284, G.286, G.287, V.288, V.289, H.291, K.332 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.103, B:V.132, B:T.134, B:I.269, B:I.269, B:I.283, B:V.289 Hydrogen bonds: B:N.270, B:K.332 Water bridges: B:N.270 pi-Stacking: B:H.291, B:H.291 Halogen bonds: B:L.284 8XY.3: 18 residues within 4Å: Chain C: F.103, G.105, Y.106, T.107, V.132, L.266, I.269, N.270, I.283, L.284, G.286, G.287, V.288, V.289, H.291, K.332 Chain D: T.240, D.241 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:F.103, C:V.132, C:I.269, C:I.269, C:I.283, C:V.289 Hydrogen bonds: C:N.270, C:K.332 Water bridges: C:N.270 pi-Stacking: C:H.291, C:H.291 Halogen bonds: C:L.284 8XY.4: 18 residues within 4Å: Chain C: T.240, D.241 Chain D: F.103, G.105, Y.106, T.107, V.132, T.134, I.269, N.270, I.283, L.284, G.286, G.287, V.288, V.289, H.291, K.332 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:F.103, D:V.132, D:T.134, D:I.269, D:I.269, D:I.283, D:V.289 Hydrogen bonds: D:N.270, D:K.332 Water bridges: D:N.270 pi-Stacking: D:H.291, D:H.291 Halogen bonds: D:L.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, Y. et al., Discovery of Novel Allosteric Inhibitors of Deoxyhypusine Synthase. J.Med.Chem. (2020)

Release Date

2020-04-01

Peptides

Deoxyhypusine synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Deoxyhypusine synthase

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